10.4 Pathology of Infectious Diseases: Transmission, Tissue Reaction Patterns & Diagnostic Morphology

Key Takeaways

  • The five tissue patterns are suppurative (neutrophils: pyogenic bacteria), mononuclear and granulomatous (TB, fungi, syphilis), cytopathic-cytoproliferative (viruses), necrotizing (Clostridium, amebiasis) and chronic inflammation with scarring (schistosomiasis, chronic hepatitis).

  • Hallmark viral inclusions are Cowdry A intranuclear inclusions with multinucleated cells (herpesviruses), "owl's eye" inclusions in enlarged cells (cytomegalovirus), Warthin-Finkeldey giant cells (measles), Negri bodies (rabies) and ground-glass hepatocytes (hepatitis B).

  • Lepromatous leprosy has foamy macrophages full of bacilli (lepra cells) and weak cell-mediated immunity; tuberculoid leprosy has well-formed granulomas with few bacilli and nerve damage.

  • Aspergillus has thin septate hyphae branching at acute angles and invades vessels; Mucor has broad, ribbon-like, pauciseptate hyphae branching at right angles; Cryptococcus has a thick capsule stained by mucicarmine or India ink.

  • Schistosoma japonicum eggs in the portal tracts provoke granulomas and pipe-stem (Symmers) fibrosis with presinusoidal portal hypertension; amebic colitis forms flask-shaped ulcers.

Last updated: October 2026

Why this area matters

The TOS lists:

  • transmission and dissemination of microbes;
  • inflammatory responses to infections;
  • viral infections (acute viral, herpesviruses, hepatitis B, Epstein-Barr virus);
  • bacterial infections (gram-positive and gram-negative, mycobacteria, spirochetes, anaerobes, chlamydia, rickettsia);
  • fungal infections;
  • parasitic infections (protozoa and metazoa).

Infections remain a leading cause of illness in the Philippines. The pathologist's task is to recognize the tissue reaction and identify the organism.

Transmission, spread and injury

Routes of entry:

  • skin, through breaks, insect bites or needles;
  • the respiratory tract, by droplets and aerosols;
  • the gastrointestinal tract, by the fecal-oral route;
  • the urogenital tract, sexually;
  • vertically, through the placenta, at birth or in breast milk.

Spread within the body: local invasion (helped by hyaluronidase and collagenase), lymphatics, blood (bacteremia, viremia, fungemia), and nerves (rabies, herpes simplex, varicella-zoster).

Mechanisms of injury:

  • direct cell killing by viruses;
  • toxins, either endotoxin (lipopolysaccharide, which causes septic shock) or exotoxins such as cholera, tetanus, botulinum and diphtheria toxins;
  • enzymes;
  • injury from the host immune response, as in hepatitis B hepatocyte killing, post-streptococcal glomerulonephritis and tuberculous caseation.

The five patterns of tissue reaction

PatternHallmarkExamples
Suppurative (purulent)Neutrophils, abscesses, pusStaphylococcus aureus, Streptococcus pneumoniae, gram-negative bacilli
Mononuclear and granulomatousLymphocytes, plasma cells, macrophages; granulomasTuberculosis, leprosy, syphilis, histoplasmosis, schistosomiasis
Cytopathic-cytoproliferativeCell injury with inclusions, multinucleation or proliferation, often with little inflammationHerpesviruses, CMV, measles, HPV (koilocytes), molluscum contagiosum
Tissue necrosisRapid, extensive necrosisClostridium perfringens gas gangrene, Entamoeba histolytica, fulminant hepatitis
Chronic inflammation and scarringFibrosis that ends in organ dysfunctionChronic hepatitis B (cirrhosis), schistosomiasis, tuberculous constrictive pericarditis

Viral infections

VirusDiagnostic morphology
MeaslesWarthin-Finkeldey multinucleated giant cells in lymphoid tissue and lungs; Koplik spots; giant-cell pneumonia in the immunocompromised
Herpes simplex and varicella-zosterIntranuclear Cowdry A inclusions, multinucleated cells with molded nuclei (Tzanck smear); vesicles; necrotizing temporal-lobe encephalitis (HSV-1)
CytomegalovirusEnlarged cells with "owl's eye" intranuclear and granular cytoplasmic inclusions; retinitis, colitis and pneumonitis in AIDS; congenital infection
Epstein-Barr virusInfectious mononucleosis with atypical lymphocytes (reactive CD8 T cells), paracortical hyperplasia, splenomegaly (rupture risk); oncogenic
Hepatitis BGround-glass hepatocytes (HBsAg in the endoplasmic reticulum); acute lobular hepatitis with apoptotic Councilman bodies; chronic portal inflammation with interface hepatitis, then cirrhosis and hepatocellular carcinoma
RabiesNegri bodies (eosinophilic cytoplasmic inclusions) in hippocampal pyramidal cells and cerebellar Purkinje cells
HPVKoilocytes (perinuclear halo, wrinkled nuclei) in condylomas and cervical dysplasia
DenguePlasma leakage and hemorrhage with little tissue inflammation; marrow suppression

Bacterial infections

  • Gram-positive:
    • S. aureus forms abscesses, furuncles, carbuncles and osteomyelitis; its toxins cause toxic shock syndrome and scalded skin.
    • Streptococcus pyogenes causes spreading cellulitis and necrotizing fasciitis, and later rheumatic fever and glomerulonephritis.
    • Clostridium perfringens causes gas gangrene: myonecrosis with gas bubbles and few neutrophils.
    • Corynebacterium diphtheriae forms a gray pseudomembrane, and its exotoxin causes myocarditis and neuritis.
  • Gram-negative:
    • Typhoid (Salmonella Typhi) causes hyperplasia and ulceration of Peyer patches (oval ulcers along the bowel axis) with mononuclear cells, and perforation in the third week.
    • Shigella causes superficial colonic ulcers.
    • Neisseria meningitidis causes purulent meningitis and adrenal hemorrhage.
    • Pseudomonas causes vasculitis (ecthyma gangrenosum).
  • Mycobacteria:
    • Tuberculosis forms caseating granulomas with Langhans giant cells. Primary infection forms the Ghon complex (a subpleural focus near the interlobar fissure plus the draining hilar node). Secondary (reactivation) disease forms apical cavities. Miliary seeding produces tiny nodules throughout the organs. In AIDS, granulomas may be poorly formed.
    • Leprosy (M. leprae, still reported in the Philippines):
      • Tuberculoid: strong Th1 response, well-formed granulomas, few bacilli, asymmetric anesthetic patches and thickened nerves.
      • Lepromatous: weak cell-mediated immunity, sheets of foamy lepra cells full of bacilli (globi), nodular lesions, leonine facies, symmetric neuropathy.
  • Spirochetes:
    • Syphilis shows endarteritis obliterans with plasma cells at every stage. Stages are chancre, secondary mucocutaneous lesions and condylomata lata, then tertiary gummas, aortitis (ascending aneurysm) and neurosyphilis. Congenital syphilis causes Hutchinson teeth, saddle nose and saber shins.
    • Leptospirosis causes vasculitis with hepatic and renal injury (Weil disease) and pulmonary hemorrhage.
  • Anaerobes: lung abscess after aspiration, actinomycosis (sulfur granules, draining sinuses), mixed intra-abdominal abscesses.
  • Chlamydia: urethritis, cervicitis, pelvic inflammatory disease, lymphogranuloma venereum (stellate abscesses in nodes), neonatal conjunctivitis and pneumonia, trachoma.
  • Rickettsia (scrub typhus is endemic in parts of the Philippines): infect endothelium, causing vasculitis, rash and multi-organ microinfarcts; an eschar at the chigger bite.

Fungal infections

FungusTissue formDisease features
CandidaYeasts plus pseudohyphaeThrush, esophagitis, vaginitis, candidemia in neutropenia and with catheters
AspergillusSeptate hyphae branching at acute (45°) anglesAllergic bronchopulmonary disease, aspergilloma in old TB cavities, angioinvasive disease with infarcts in neutropenia
Mucorales (Mucor, Rhizopus)Broad, ribbon-like, pauciseptate hyphae branching at right anglesRhinocerebral infection in diabetic ketoacidosis; rapid vascular invasion
Cryptococcus neoformansBudding yeast with a thick polysaccharide capsule (mucicarmine, India ink)Meningitis in AIDS; pigeon droppings
Histoplasma capsulatumSmall intracellular yeasts in macrophagesGranulomas resembling TB
Pneumocystis jiroveciiCysts on methenamine silverFoamy intra-alveolar exudate in AIDS

Parasitic infections

Protozoa:

  • Entamoeba histolytica causes flask-shaped colonic ulcers with trophozoites that contain ingested red cells, and liver abscesses with "anchovy paste" contents.
  • Plasmodium falciparum malaria causes sequestration of parasitized red cells in brain capillaries (cerebral malaria with ring hemorrhages), malarial pigment (hemozoin), splenomegaly and hemolysis.
  • Toxoplasma, Leishmania and Giardia are other key protozoa.

Metazoa (helminths):

  • Schistosoma japonicum (endemic in parts of the Visayas and Mindanao) lays eggs in mesenteric venules. Eggs trapped in the liver provoke granulomas with eosinophils, then pipe-stem (Symmers) periportal fibrosis, presinusoidal portal hypertension, splenomegaly and varices.
  • Taenia solium cysticercosis forms cysts in the brain (seizures) and muscle.
  • Filariasis (Wuchereria, Brugia) blocks lymphatics, causing lymphedema and elephantiasis.
  • Ascaris can obstruct the bowel and biliary tree.
  • Strongyloides hyperinfection occurs with corticosteroid use.
  • Capillaria philippinensis causes protein-losing diarrhea.

Special stains for organisms

StainOrganisms highlighted
GramBacteria (gram-positive purple, gram-negative pink)
Ziehl-Neelsen (acid-fast); Fite stain for leprosyMycobacteria, Nocardia (modified)
Gomori methenamine silver (GMS) and PASFungi, Pneumocystis
Mucicarmine; India inkCryptococcus capsule
GiemsaMalaria parasites, Leishmania, H. pylori, Chlamydia inclusions
Warthin-Starry and Steiner silverSpirochetes (Treponema, Leptospira), Bartonella, H. pylori
Test Your Knowledge

A biopsy of a skin ulcer in a patient with AIDS shows enlarged endothelial and epithelial cells containing large purple intranuclear inclusions surrounded by a clear halo, with granular cytoplasmic inclusions. Which virus is responsible?

A

Measles virus

B

Rabies virus

C

Human papillomavirus

D

Cytomegalovirus

Test Your Knowledge

A farmer from Leyte has massive splenomegaly, esophageal varices and normal liver synthetic function. Liver biopsy shows dense periportal fibrosis surrounding the portal veins, with granulomas around eggs bearing a small lateral knob. Which organism causes this?

A

Fasciola hepatica

B

Clonorchis sinensis

C

Entamoeba histolytica

D

Schistosoma japonicum

Test Your Knowledge

A diabetic man in ketoacidosis develops black necrotic tissue on the nasal turbinates and palate. Biopsy shows broad, ribbon-like hyphae with few septa that branch at right angles and invade blood vessels. What is the diagnosis?

A

Cryptococcosis

B

Mucormycosis

C

Candidiasis

D

Invasive aspergillosis

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