19.1 Gastrointestinal Infections I: Gastroenteritis & Enterocolitis, Cholera, Typhoid & Salmonellosis, Shigellosis, Food Poisoning and Viral Hepatitis

Key Takeaways

  • Cholera causes painless rice-water diarrhea through cAMP-raising toxin; rehydration (ORS or Ringer's lactate) is the life-saving treatment and a single antibiotic dose shortens illness.

  • In typhoid fever, blood culture is most useful in the first week and bone marrow culture is the most sensitive test; the Widal test is unreliable in endemic areas.

  • Typhoid perforation of the terminal ileum (Peyer patches) classically occurs in the third week; chronic carriers harbor S. Typhi in the gallbladder.

  • Food poisoning within 1 to 6 hours suggests a preformed toxin (Staphylococcus aureus or Bacillus cereus emetic toxin); 8 to 16 hours suggests Clostridium perfringens or B. cereus diarrheal toxin.

  • Hepatitis B vaccine is given within 24 hours of birth; vaccinated people have anti-HBs alone, while those who recovered from infection also have anti-HBc IgG.

Last updated: October 2026

Why this area matters

The TOS gastrointestinal area lists:

  • enterocolitis and gastroenteritis;
  • hepatitis;
  • typhoid fever and salmonellosis;
  • shigellosis;
  • cholera;
  • intestinal parasites, covered in the next section.

Acute diarrhea is among the leading causes of illness in Filipino children. Typhoid, cholera and hepatitis A outbreaks follow contamination of water supplies, especially after typhoons and floods. The Philippines also has a high prevalence of chronic hepatitis B. Board questions use the stool character, incubation period and food history to point to an organism, then ask about rehydration, antibiotics or vaccines.

A syndromic approach to diarrhea

SyndromeFeaturesUsual causes
Secretory (watery) diarrheaLarge volume, no blood or fecal leukocytes, little feverVibrio cholerae, ETEC, rotavirus, norovirus, Giardia, Cryptosporidium
Inflammatory diarrhea or dysenterySmall, frequent stools with blood and mucus, tenesmus, fever, fecal leukocytesShigella, Campylobacter, non-typhoidal Salmonella, EIEC, EHEC (usually little fever), Entamoeba histolytica
Enteric feverProlonged fever, little or no diarrheaSalmonella Typhi and Paratyphi
Toxin-mediated food poisoningVomiting within hours of a shared mealStaphylococcus aureus, Bacillus cereus

Enterocolitis is inflammation of the small and large bowel, typical of Salmonella, Campylobacter, Yersinia (which can mimic appendicitis) and C. difficile. Gastroenteritis emphasizes vomiting and watery diarrhea, typical of viruses and preformed toxins.

Viral gastroenteritis

  • Rotavirus:
    • a double-stranded RNA virus (Reoviridae) with a wheel-like appearance;
    • the classic cause of severe dehydrating diarrhea in infants and young children;
    • prevented by oral rotavirus vaccine.
  • Norovirus: causes explosive outbreaks of vomiting and diarrhea in all ages, in schools, ships and institutions. Very few virions are infectious, and alcohol hand rub works poorly against it.
  • Enteric adenovirus (types 40 and 41) and astrovirus cause milder disease in children.

Cholera

  • Vibrio cholerae serogroups O1 (classical and El Tor biotypes) and O139 cause epidemic cholera.
  • Patients have painless rice-water stools and vomiting, with rapid hypovolemic shock, hypokalemia and acidosis but no fever.
  • Diagnosis: dark-field microscopy shows darting motility, and stool culture on TCBS gives yellow colonies.
  • Rehydration follows the WHO plans:
    • Plan A (no dehydration): home fluids and ORS.
    • Plan B (some dehydration): ORS 75 mL/kg over 4 hours.
    • Plan C (severe dehydration): Ringer's lactate 100 mL/kg IV. Give 30 mL/kg in the first 30 minutes, then 70 mL/kg over 2.5 hours, in patients aged 1 year or older. Infants get the same volumes over 1 hour and 5 hours.
  • Antibiotics shorten diarrhea and shedding: single-dose doxycycline in adults, and azithromycin in children and pregnant women.
  • Zinc is given to children with diarrhea.
  • Prevention relies on safe water, sanitation and oral cholera vaccine in outbreaks.

Typhoid fever and salmonellosis

  • Salmonella Typhi:
    • infects humans only and spreads through contaminated food and water;
    • invades Peyer patches of the terminal ileum and survives within macrophages, then spreads to the liver, spleen, bone marrow and gallbladder.
  • Clinical course:
    • Week 1: step-ladder fever, headache, abdominal pain, constipation or diarrhea, and relative bradycardia.
    • Week 2: rose spots on the trunk, hepatosplenomegaly and a coated tongue.
    • Week 3: complications such as intestinal perforation and hemorrhage, typhoid encephalopathy and myocarditis.
  • Diagnosis:
    • blood culture is the most useful test in the first week;
    • bone marrow culture is the most sensitive, even after antibiotics;
    • stool and urine cultures turn positive later.
    • The Widal test has poor specificity in endemic areas, and rapid antibody tests are only supportive.
  • Treatment:
    • azithromycin for uncomplicated disease, or ceftriaxone for severe disease, guided by local susceptibility because fluoroquinolone resistance is widespread in Asia;
    • surgery for perforation.
  • Chronic carriers harbor the organism in the gallbladder, often with gallstones, and are a source of outbreaks; food handlers need clearance.
  • Prevention: typhoid Vi polysaccharide or typhoid conjugate vaccine, safe water and food hygiene.
  • Non-typhoidal Salmonella (from poultry, eggs and reptiles) causes enterocolitis. Bacteremia and osteomyelitis occur in infants, older adults, people with HIV and people with sickle cell disease. Uncomplicated enterocolitis is usually not treated with antibiotics, which can prolong carriage.

Shigellosis and other invasive bacteria

  • Shigella:
    • a very small inoculum is enough, so it spreads person to person in crowded settings;
    • it invades colonic M cells and spreads between cells using actin;
    • S. dysenteriae type 1 makes Shiga toxin and can cause hemolytic uremic syndrome;
    • treatment is rehydration and an antibiotic chosen by local resistance, such as azithromycin, ciprofloxacin or ceftriaxone.
  • Campylobacter jejuni comes from undercooked poultry and is the most common antecedent of Guillain-Barré syndrome.
  • EHEC (O157:H7) comes from undercooked beef and causes bloody diarrhea with little fever. Avoid antibiotics because of the risk of HUS.
  • EPEC causes infant diarrhea through attaching-and-effacing lesions.
  • Vibrio parahaemolyticus comes from raw seafood. V. vulnificus comes from raw oysters or seawater wounds and is deadly in people with liver cirrhosis or iron overload.

Clostridioides difficile and Helicobacter pylori

  • C. difficile:
    • follows antibiotics (clindamycin, cephalosporins, fluoroquinolones) and hospitalization;
    • toxins A and B cause watery diarrhea, pseudomembranous colitis and toxic megacolon;
    • management is to stop the offending antibiotic and give oral vancomycin or fidaxomicin;
    • alcohol does not kill the spores, so use soap and water.
  • H. pylori:
    • a spiral, urease-positive organism that colonizes the gastric antrum;
    • causes chronic gastritis, duodenal and gastric ulcers, gastric adenocarcinoma and MALT lymphoma;
    • diagnosed by urea breath test, stool antigen or biopsy urease test;
    • treated with a proton pump inhibitor plus two antibiotics, or bismuth quadruple therapy.

Food poisoning by incubation period

IncubationOrganismTypical food
1 to 6 hours (vomiting)S. aureus (preformed heat-stable enterotoxin)Custards, mayonnaise salads, ham handled by a carrier
1 to 6 hours (vomiting)B. cereus emetic toxin (cereulide)Reheated fried rice
8 to 16 hours (diarrhea, cramps)Clostridium perfringens, B. cereus diarrheal toxinReheated meat and gravies
12 to 72 hoursSalmonella, Campylobacter, V. parahaemolyticusPoultry, eggs, seafood

Viral Hepatitis: Comprehensive Serological Differentiation

Viral hepatitis encompasses five distinct hepatotropic viruses, each with unique taxonomic, transmission, and chronicity profiles:

FeatureHepatitis A (HAV)Hepatitis B (HBV)Hepatitis C (HCV)Hepatitis D (HDV)Hepatitis E (HEV)
Viral Genome(+)ssRNA, nakedPartially dsDNA, circular, enveloped(+)ssRNA, enveloped(-)ssRNA, circular defective, enveloped(+)ssRNA, naked
Viral FamilyPicornaviridaeHepadnaviridaeFlaviviridaeGenus Deltavirus (family Kolmioviridae)Hepeviridae
TransmissionFecal-oral (shellfish, contaminated water)Parenteral, sexual, vertical (perinatal)Bloodborne (IV drug use, transfusions)Parenteral, mucosalFecal-oral (waterborne epidemics)
Incubation15-45 days45-160 days15-150 daysSimilar to HBV15-60 days
Chronicity Risk0% (never causes chronic carrier state)Adults: 5-10%; Neonates: 90%80% (very high rate of chronic hepatitis)Coinfection: low; Superinfection: > 70%0% (except rare solid organ transplant recipients)
Unique Clinical FeatureAcute self-limited; diagnosis via anti-HAV IgMReverse transcriptase activity; high risk of hepatocellular carcinomaHigh antigenic variability in envelope glycoproteins; treated with Direct-Acting Antivirals (DAAs)Defective virus; requires HBsAg envelope coat for packaging and transmissionHigh maternal mortality (~20%) from fulminant hepatic failure during pregnancy

Deciphering the Hepatitis B Serology Panel

Interpretation of the standard HBV serologic panel is a high-yield competency on the PLE:

Clinical DiagnosisHBsAgAnti-HBsAnti-HBc IgMAnti-HBc IgGHBeAgAnti-HBe
Acute Infection (Early)PositiveNegativePositiveNegativePositiveNegative
Window PeriodNegativeNegativePositiveNegativeNegativeNegative / Positive
Chronic Infection (High Replication)PositiveNegativeNegativePositivePositiveNegative
Chronic Infection (Low Replication)PositiveNegativeNegativePositiveNegativePositive
Recovery & Natural ImmunityNegativePositiveNegativePositiveNegativePositive
Successful VaccinationNegativePositiveNegativeNegativeNegativeNegative

The Serologic Window Period: In resolving acute HBV infection, HBsAg becomes undetectable in the serum before neutralizing anti-HBs antibodies reach detectable thresholds. During this diagnostic "window period" (which can persist for weeks), the only detectable marker of acute infection is Anti-HBc IgM.

Philippine notes on hepatitis:

  • The Philippines has a high burden of chronic hepatitis B, mostly acquired at birth or in early childhood. For this reason, the National Immunization Program gives the hepatitis B birth dose within 24 hours of birth, followed by the pentavalent vaccine series.
  • Infants of HBsAg-positive mothers also receive hepatitis B immune globulin.
  • Hepatitis A outbreaks follow contaminated water or food.
  • Chronic hepatitis C is curable with direct-acting antivirals.
Test Your Knowledge

A 25-year-old healthcare intern sustains a needlestick injury from a hollow-bore needle used on a patient with chronic liver disease. Rapid serologic profiling of the intern reveals positive anti-HBs (> 100 mIU/mL), negative HBsAg, negative HBeAg, and negative anti-HBc (total and IgM). What is the correct interpretation of the intern's serologic status?

A

Chronic hepatitis B infection with low viral replication and suppressed antigen expression

B

Immunity to hepatitis B resulting from natural infection and complete viral clearance

C

Early acute hepatitis B infection evaluated during the serologic window period

D

Immunity to hepatitis B acquired through prior successful vaccination

Test Your Knowledge

During a cholera outbreak in an evacuation center, a 30-year-old man arrives lethargic with no palpable radial pulse, sunken eyes and very slow skin pinch after profuse rice-water stools. What is the correct initial management?

A

Oral rehydration solution 75 mL/kg over 4 hours with close observation

B

IV ciprofloxacin and loperamide first, followed by oral fluids once the diarrhea slows

C

Normal saline 20 mL/kg IV once, followed by oral fluids only if he vomits

D

Ringer's lactate 100 mL/kg IV, with 30 mL/kg in the first 30 minutes and the rest over 2.5 hours

Test Your Knowledge

A 15-year-old from a barangay with a contaminated water supply has had fever for 5 days, rising each day, with headache, abdominal pain and a pulse slower than expected for the fever. He has received no antibiotics. Which test is most likely to confirm the diagnosis now?

A

Urine culture

B

Blood culture

C

Widal test on a single serum sample

D

Stool culture

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