5.2 Gram-Negative Bacilli & Opportunistic Pathogens

Key Takeaways

  • Pseudomonas aeruginosa is an aerobic, oxidase-positive, non-lactose fermenting Gram-negative rod that produces pyocyanin and pyoverdine; it is the premier pathogen causing osteochondritis and osteomyelitis following plantar puncture wounds through rubber-soled athletic shoes.

  • Exotoxin A, the primary virulence factor of Pseudomonas aeruginosa, inactivates eukaryotic Elongation Factor 2 (EF-2) via ADP-ribosylation, halting host cellular translation via a molecular mechanism identical to diphtheria toxin.

  • Proteus mirabilis is a non-lactose fermenting Enterobacteriaceae exhibiting swarming motility and robust urease production, which alkalinizes urine to induce precipitation of magnesium ammonium phosphate into struvite staghorn calculi.

  • Pasteurella multocida is a fastidious Gram-negative coccobacillus with bipolar safety-pin staining found in domestic cat and dog oral cavities; it triggers rapidly accelerating cellulitis, tenosynovitis, and periostitis within 24 hours of bite inoculations.

  • Vibrio vulnificus is a halophilic, curved Gram-negative rod acquired through marine saltwater wound inoculation or raw oyster ingestion; it causes fulminant bullous hemorrhagic cellulitis and septic shock with catastrophic mortality in patients with hepatic cirrhosis or iron overload.

Last updated: October 2026

5.2 Gram-Negative Bacilli & Opportunistic Pathogens

Independent Study Guide Notice: Independent study guide by OpenExamPrep. This educational resource is developed independently by OpenExamPrep and is not sponsored, endorsed, or affiliated with the National Board of Podiatric Medical Examiners (NBPME) or Meazure Learning.


Overview & Laboratory Identification of Gram-Negative Bacilli

Gram-negative bacteria possess an envelope composed of an inner cytoplasmic membrane, a thin peptidoglycan layer (1–3 nm) suspended within a fluid-filled periplasmic space, and an outer membrane unique to Gram-negative organisms. The outer membrane's outer leaflet contains Lipopolysaccharide (LPS / endotoxin), while its substance is embedded with transmembrane diffusion channels called porins.

In clinical podiatric bacteriology, Gram-negative bacilli are encountered in contaminated puncture wounds, human and animal bites, aquatic trauma, and chronic limb-threatening diabetic foot infections.

Gram-Negative Bacilli⟶{Lactose Fermenters (Pink on MacConkey):Escherichia, Klebsiella, EnterobacterNon-Lactose Fermenters (Colorless):{Oxidase (+):Pseudomonas, Vibrio, PasteurellaOxidase (-):Proteus, Serratia, Acinetobacter\text{Gram-Negative Bacilli} \longrightarrow \begin{cases} \textbf{Lactose Fermenters (Pink on MacConkey):} & \text{Escherichia, Klebsiella, Enterobacter} \\ \textbf{Non-Lactose Fermenters (Colorless):} & \begin{cases} \textbf{Oxidase (+):} & \text{Pseudomonas, Vibrio, Pasteurella} \\ \textbf{Oxidase (-):} & \text{Proteus, Serratia, Acinetobacter} \end{cases} \end{cases}

OrganismMorphology & StainingMacConkey AgarOxidaseKey Biochemical FeaturesClinical Podiatric Relevance
Pseudomonas aeruginosaSlender rod, single polar flagellumNon-fermenter (colorless)PositivePyocyanin & pyoverdine; sweet grape odor; grows at 42°CPlantar puncture wounds through sneakers (chondritis/osteomyelitis), ecthyma gangrenosum
Escherichia coliRod, peritrichous flagellaRapid fermenter (pink/red)NegativeIndole (+); green metallic sheen on EMB agarDiabetic foot infections, decubitus ulcers, urosepsis
Klebsiella pneumoniaePlump rod, prominent capsuleFermenter (mucoid colonies)NegativeNon-motile; urease (+) (weak); string test positiveChronic diabetic foot abscesses, lobar pneumonia in alcoholics
Proteus mirabilisPleomorphic rodNon-fermenter (colorless)NegativeSwarming motility; strong urease (+); produces H2SH_2SStruvite staghorn renal calculi, polymicrobial foot ulcers
Serratia marcescensSmall rodSlow/late fermenterNegativeProduces red pigment (prodigiosin) at 25°C; motileNosocomial foot wound infections, osteomyelitis in IV drug users
Acinetobacter baumanniiCoccobacillus, non-motileNon-fermenterNegativeStrict aerobe; highly multidrug-resistant (CRAB)Nosocomial trauma wound infections, post-surgical blast injuries
Pasteurella multocidaCoccobacillus, bipolar stainingNo growth on MacConkeyPositiveCatalase (+); indole (+); animal oral commensalCat & dog bites; rapid cellulitis (<24 hrs), tenosynovitis, periostitis
Eikenella corrodensSmall slender rodNon-fermenterPositiveBleach-like odor; pits/corrodes blood agarHuman "fight bites", clenched-fist injuries; tenosynovitis
Vibrio vulnificusCurved rod, polar flagellumFermenter (variable)PositiveHalophilic (requires NaCl); fermented lactoseSaltwater puncture, marine trauma; hemorrhagic bullae, necrotizing fasciitis

Pseudomonas aeruginosa: Virulence & Lower Extremity Pathology

Pseudomonas aeruginosa is an ubiquitous, strictly aerobic, non-spore-forming Gram-negative rod found extensively in soil, water, and damp hospital environments. It exhibits exceptional metabolic versatility and intrinsic antimicrobial resistance.

Pigments & Physical Characteristics

  • Colony Odor: Cultures emit a distinctive, sweet, fruity grape-like or fresh corn tortilla odor, attributable to the volatile compound 2-aminoacetophenone.
  • Pyocyanin: A blue, non-fluorescent phenazine pigment that generates toxic reactive oxygen species (superoxide and hydrogen peroxide). Pyocyanin paralyzes host respiratory and epidermal cilia, damages endothelial membranes, and drives neutrophilic apoptosis.
  • Pyoverdine (Fluorescein): A fluorescent, water-soluble yellow-green siderophore that chelates ferric iron (Fe3+Fe^{3+}) from host transferrin and lactoferrin, transporting it into the bacterium to fuel growth in iron-restricted tissue environments.
  • Thermal Tolerance: Capable of growing robustly at elevated temperatures up to 42°C, distinguishing it from other environmental Pseudomonas species.

Virulence Determinants

  • Exotoxin A: The premier lethal virulence factor of P. aeruginosa. Exotoxin A is an A-B subunit toxin that enters eukaryotic host cells and catalyzes the transfer of ADP-ribose from nicotinamide adenine dinucleotide (NAD) to Elongation Factor 2 (EF-2):

NAD++EF-2→Exotoxin AADP-ribosyl-EF-2+Nicotinamide+H+\text{NAD}^+ + \text{EF-2} \xrightarrow{\textbf{Exotoxin A}} \text{ADP-ribosyl-EF-2} + \text{Nicotinamide} + \text{H}^+

This ADP-ribosylation permanently inactivates EF-2, abruptly halting eukaryotic ribosomal peptide translocation and causing total inhibition of host cellular protein synthesis and apoptotic cell death. The molecular mechanism of Exotoxin A is biochemically identical to that of Corynebacterium diphtheriae toxin.

  • Elastase (LasA and LasB): Zinc-dependent metalloproteases that degrade host structural elastin, collagen, and laminin. Elastase digests arterial and venous walls, causing localized vascular thrombosis, ischemic infarction, and tissue hemorrhage.
  • Type III Secretion System (T3SS) & Exoenzymes (ExoS, ExoT, ExoU, ExoY): A molecular syringe apparatus that injects effector toxins directly across the eukaryotic plasma membrane. ExoU possesses potent phospholipase activity, inducing rapid membrane destruction and host cell lysis.
  • Alginate Capsule (Biofilm): A hydrophilic exopolysaccharide polymer of D-mannuronic and L-guluronic acids. Forms a dense, mucoid slime matrix that shields bacterial microcolonies from polymorphonuclear leukocyte phagocytosis, prevents complement-mediated lysis, and blocks antimicrobial penetration in chronic diabetic foot ulcers and cystic fibrosis.

Podiatric Clinical Syndromes

Important

Plantar Puncture Wounds Through Rubber-Soled Athletic Shoes The classic, board-tested scenario involves a patient stepping on a nail, screw, or tack that punctures through the thick rubber or polyurethane sole of a sneaker. Pseudomonas aeruginosa thrives in the warm, moist, dark, foam-rubber cushion matrix of worn athletic footwear. The penetrating object introduces rubber foreign bodies and Pseudomonas directly into the deep, avascular plantar structures: plantar aponeurosis, flexor tendon sheaths, fibrocartilaginous joint plates, and periosteum.

  • Clinical Evolution: Patients often experience minor immediate pain that subsides, followed 3 to 10 days later by accelerating, deep, throbbing plantar pain, localized erythema, and dorsal edema.
  • Complications: Causes virulent chondritis, septic arthritis (especially at the 1st metatarsophalangeal joint), and calcaneal or metatarsal osteomyelitis.
  • Management: Plain radiographs (to assess foreign body and cortical lysis), urgent surgical irrigation and debridement, and antipseudomonal antimicrobial therapy (e.g., ciprofloxacin, cefepime, piperacillin-tazobactam).
  • Ecthyma Gangrenosum: A fulminant cutaneous manifestation of P. aeruginosa bacteremia occurring in immunocompromised, neutropenic, or severely burned patients. Pseudomonas seeds dermal vascular walls from the bloodstream, where elastase degrades the internal elastic lamina. This leads to necrotizing perivascular vasculitis, ischemic thrombosis, and epidermal infarction. Lesions begin as painless erythematous macules that rapidly transform into hemorrhagic bullae, which rupture into punched-out necrotic ulcers with black-to-violaceous eschars and surrounding erythematous halos.
  • Hot Tub Folliculitis: Self-limited, pruritic follicular pustules occurring 8 to 48 hours after exposure to contaminated, inadequately chlorinated hot tubs, swimming pools, or whirlpool baths.
  • Green Nail Syndrome (Chloronychia): Infiltration of P. aeruginosa beneath onycholytic, dystrophic toenails or fingernails in individuals exposed to prolonged wet environments. The nail plate displays a dark blue-green discoloration produced by local pyocyanin and pyoverdine deposition.

Enterobacteriaceae: Podiatric Manifestations & Diagnostics

The family Enterobacteriaceae comprises facultatively anaerobic Gram-negative bacilli that are oxidase-negative, ferment glucose with acid production, and reduce nitrates to nitrites (NO3−→NO2−NO_3^- \rightarrow NO_2^-). They are normal inhabitants of the mammalian intestinal tract.

Escherichia coli

  • Microbiology: Rapid lactose fermenter producing bright pink colonies with surrounding bile precipitation on MacConkey agar; displays a hallmark green metallic sheen on Eosin Methylene Blue (EMB) agar; indole-positive (cleaves tryptophan to indole via tryptophanase).
  • Virulence: Endotoxin (Lipid A of LPS) triggers macrophage TLR4 to induce septic shock; P-fimbriae (pyelonephritis-associated pili) bind galactose-galactose residues on uroepithelium; K1 capsular antigen mediates neonatal meningitis.
  • Podiatric Role: Frequent Gram-negative isolate in polymicrobial diabetic foot infections, decubitus heel ulcers, and post-operative surgical wound contamination in debilitated or incontinent patients.

Klebsiella pneumoniae

  • Microbiology: Lactose fermenter; non-motile (distinguishing it from motile Enterobacteriaceae like Enterobacter and E. coli); urease-positive (weak); possesses an extraordinarily thick, viscous polysaccharide capsule producing strikingly mucoid, glistening colonies that stretch into long strings when touched with an inoculation loop (positive string test).
  • Clinical Presentation: Causes severe community-acquired lobar pneumonia in alcoholics and diabetics, characterized by cavitation and gelatinous, bloody "currant jelly sputum". In the lower extremity, K. pneumoniae is a destructive pathogen in chronic, deep plantar space abscesses and contiguous osteomyelitis in diabetic individuals.

Proteus mirabilis & Proteus vulgaris

  • Microbiology: Non-lactose fermenting Gram-negative rods; highly motile with extensive peritrichous flagella.
  • Swarming Motility: When inoculated on blood agar, Proteus alternates between short swimming cells and elongated, hyperflagellated swarming cells, migrating outward across the plate in concentric waves of growth (swarming phenomenon), obscuring discrete single colonies.
  • Urease Production & Calculus Formation: Proteus produces massive quantities of the enzyme urease, which hydrolyzes urea into carbon dioxide and ammonia:

NH2CONH2+H2O→Urease2NH3+CO2\text{NH}_2\text{CONH}_2 + \text{H}_2\text{O} \xrightarrow{\textbf{Urease}} 2\text{NH}_3 + \text{CO}_2

The generated ammonia buffers hydrogen ions to form ammonium (NH4+NH_4^+), driving local urinary and tissue pH to highly alkaline levels (>7.5–8.0>7.5–8.0). Alkalinization dramatically decreases the solubility of magnesium, ammonium, and phosphate ions, inducing their rapid crystallization into magnesium ammonium phosphate (MgNH4PO4⋅6H2OMgNH_4PO_4 \cdot 6H_2O), known as struvite or triple phosphate calculi. These form massive staghorn calculi that cast the renal calyces and pelvis, serving as persistent reservoirs for recurrent bacteremia.

  • Species Differentiation: Proteus mirabilis is indole-negative (sensitive to ampicillin), while Proteus vulgaris is indole-positive.
  • Podiatric Role: Common co-pathogen in chronic, macerated interdigital toe spaces, foul-smelling venous stasis ulcers, and polymicrobial diabetic foot osteomyelitis.

Serratia marcescens

  • Microbiology: Slow or late lactose fermenter; motile; produces a vibrant, non-diffusible red-magenta pigment called prodigiosin when incubated at room temperature (25°C), though pigment production is often suppressed at 37°C.
  • Clinical Features: Opportunistic nosocomial pathogen implicated in catheter-associated UTIs, respiratory infections, and soft-tissue infections; renowned for causing osteomyelitis, septic arthritis, and endocarditis in intravenous drug users (IVDUs).

Non-Fermenting & Hospital-Acquired Opportunists

Acinetobacter baumannii

  • Microbiology: Strictly aerobic, non-motile, oxidase-negative, catalase-positive Gram-negative coccobacillus. Often appears in pairs under microscopy, mimicking Neisseria species.
  • Environmental Resilience: Possesses extreme desiccation resistance and adheres avidly to artificial surfaces, allowing it to persist for weeks on dry hospital beds, mechanical ventilators, and surgical equipment.
  • Multidrug Resistance: Notorious for evolving into Carbapenem-Resistant Acinetobacter baumannii (CRAB) via the acquisition of Class D OXA-type carbapenemases, efflux pump upregulation, and outer membrane porin alterations.
  • Podiatric & Trauma Context: Commonly colonizes and infects complex traumatic lower extremity blast injuries, open crush fractures, and surgical wounds in intensive care units, frequently requiring salvage therapy with ampicillin-sulbactam (sulbactam possesses unique intrinsic bactericidal activity against Acinetobacter), colistin (polymyxin E), or cefiderocol.

Fastidious & Zoonotic Gram-Negative Infections

Animal and human bite wounds to the foot and ankle, as well as marine trauma, introduce fastidious Gram-negative microorganisms with distinct clinical timelines and antibiotic susceptibility patterns.

                                  Bite & Environmental Wounds
                                               │
         ┌─────────────────────────────────────┼──────────────────────────────────┐
         │                                     │                                  │
     Cat / Dog Bite                       Human Bite                        Marine Puncture
         │                                     │                                  │
  Pasteurella multocida                Eikenella corrodens                Vibrio vulnificus
  - Bipolar safety-pin stain           - Bleach-like odor                 - Halophilic curved rod
  - Rapid cellulitis (<24 hrs)         - Pits / corrodes blood agar       - Hemorrhagic bullae & shock
  - Treat: Amoxicillin-clavulanate     - Clenched-fist "fight bite"       - High mortality in cirrhosis

Pasteurella multocida: Cat & Dog Bites

Pasteurella multocida is a small, facultatively anaerobic Gram-negative coccobacillus that constitutes normal oral commensal flora in up to 90% of domestic cats and 50% of dogs.

Microscopic & Laboratory Features

  • Demonstrates bipolar staining ("safety-pin" appearance) with Giemsa or Wright-Leishman stains, wherein the cell poles stain intensely while the center remains clear.
  • Oxidase-positive, catalase-positive, indole-positive; fails to grow on MacConkey agar due to bile salt sensitivity.

Clinical Manifestations in the Foot

Because feline teeth are slender, sharp, and needle-like, puncture wounds penetrate deeply into low-vascularity compartments—such as the dorsal extensor tendon sheaths, joint capsules, and periosteum of the foot.

  • Hyperacute Timeline: Infection manifests with dramatic rapidity, typically within 12 to 24 hours (often in under 6 to 12 hours) of inoculation. This hyperacute timeline contrasts sharply with Bartonella henselae (1–3 weeks) or Staphylococcus aureus (24–72 hours).
  • Presentation: Characterized by severe, throbbing pain out of proportion to puncture size, marked erythema, tense edema, and thin, serosanguinous, grey drainage.
  • Complications: Rapid progression to purulent tenosynovitis, destructive septic arthritis, and periostitis/osteomyelitis.
  • Pharmacotherapy: The first-line drug of choice is amoxicillin-clavulanate (or IV ampicillin-sulbactam). Pasteurella multocida is intrinsically resistant to macrolides (erythromycin), clindamycin, and first-generation cephalosporins (cephalexin), which are standard empiric choices for ordinary staphylococcal cellulitis. Prescribing cephalexin for a cat bite is a classic board examination pitfall that leads to clinical failure.

Eikenella corrodens: Human "Fight Bites"

Eikenella corrodens is a fastidious, facultatively anaerobic Gram-negative bacillus belonging to the HACEK group of fastidious oral commensals (Haemophilus, Aggregatibacter, Cardiobacterium, Eikenella, Kingella).

Microbiological Characteristics

  • Bleach-Like Odor: Produces a characteristic, unmistakable odor resembling sodium hypochlorite (household bleach) in culture.
  • Pitting of Agar: In approximately 50% of isolates, colonies physically pit, corrode, or depress the surface of blood agar, sinking into the medium as they grow.
  • Oxidase-positive, catalase-negative, urease-negative.

Clinical Podiatric Correlate

Classically inoculated during human bites or clenched-fist injuries ("fight bites"), where a fist strikes human teeth, driving oral organisms into the dorsal metacarpophalangeal or metatarsophalangeal joints. In podiatry, E. corrodens is isolated from wounds contaminated with human saliva (e.g., self-treatment of ingrown toenails with saliva, human bites to toes) and in diabetic foot ulcers exposed to oral secretions.

  • Treatment: Highly susceptible to penicillins (ampicillin-sulbactam, amoxicillin-clavulanate) and fluoroquinolones. E. corrodens is intrinsically resistant to clindamycin, vancomycin, metronidazole, and first-generation cephalosporins.

Bartonella henselae: Cat Scratch Disease

Bartonella henselae is a slow-growing, fastidious, pleomorphic Gram-negative rod visualized within tissue sections using the Warthin-Starry silver stain.

  • Transmission: Transmitted via scratches or bites from domestic cats carrying the cat flea (Ctenocephalides felis).
  • Cat Scratch Disease: Typically presents 1 to 3 weeks following inoculation with a primary non-tender erythematous papule or pustule at the scratch site, followed by prominent, painful, subacute regional lymphadenopathy (e.g., femoral or inguinal lymphadenitis from lower extremity scratches).
  • Bacillary Angiomatosis: In immunocompromised patients (particularly advanced HIV/AIDS with CD4 count <100/μL<100/\mu\text{L}), B. henselae induces vascular endothelial proliferation, presenting as multiple friable, vascular, red-to-purple skin papules that bleed profusely and clinically mimic Kaposi sarcoma.

Vibrio vulnificus: Marine Punctures & Cirrhosis

Vibrio vulnificus is a curved (comma-shaped) Gram-negative rod possessing a single polar flagellum. It is an obligate halophile (requiring 1% to 3% sodium chloride for growth) that inhabits warm, coastal marine waters and estuarine environments (such as the Gulf of Mexico).

Clinical Manifestations

  • Inoculation occurs when open lower extremity wounds, coral cuts, or marine puncture wounds (e.g., stepping on stingray barbs, fish hooks, or crab traps) are exposed to seawater, or through handling raw marine shellfish.
  • Fulminant Soft-Tissue Destruction: Within 12 to 72 hours, patients experience excruciating limb pain, tense swelling, and rapidly advancing cellulitis that erupts into large, dusky, bullous hemorrhagic lesions. These fluid-filled hemorrhagic blebs rapidly ulcerate into fulminant necrotizing fasciitis and myonecrosis.

Warning

The Iron-Overload / Cirrhosis Catastrophe in Vibrio vulnificus The pathogenicity of Vibrio vulnificus is profoundly dependent on the availability of free serum iron. Normal human plasma contains virtually no free iron because it is tightly sequestered by transferrin and ferritin. However, patients with chronic liver disease, hepatitis C, alcoholic cirrhosis, or hereditary hemochromatosis exhibit marked transferrin saturation and elevated free iron levels. In these patients, V. vulnificus proliferates exponentially, easily overcoming neutrophil defenses and escaping into the bloodstream. Primary septicemia with secondary metastatic hemorrhagic bullae carries a fatality rate exceeding 50%, with death frequently occurring within 48 hours of exposure. Empiric therapy requires urgent surgical fasciotomy/debridement and combination antimicrobials: Doxycycline plus Ceftriaxone (or Ciprofloxacin).

Test Your Knowledge

A 15-year-old male steps on a rusty framing nail that pierces entirely through the rubber sole of his athletic sneaker into the plantar aspect of his foot at the level of the first metatarsal head. He cleans the wound with hydrogen peroxide at home. Seven days later, he presents to the podiatric clinic with intense, throbbing forefoot pain, dorsal swelling, and erythema. Plain radiographs demonstrate soft tissue swelling and focal periosteal elevation with cortical erosion of the first metatarsal head. Synovial aspirate yields a Gram-negative bacillus that is oxidase-positive, produces a green diffusible pigment, and grows at 42°C. What is the precise molecular mechanism of the primary exotoxin produced by this pathogen?

A

Hydrolysis of host cell membrane phosphatidylcholine and sphingomyelin by phospholipase C

B

Stimulation of intracellular adenylate cyclase via ADP-ribosylation of the Gs alpha subunit

C

Inactivation of eukaryotic Elongation Factor 2 (EF-2) via ADP-ribosylation to arrest protein synthesis

D

Cleavage of synaptobrevin (VAMP) within spinal cord inhibitory Renshaw interneurons

Test Your Knowledge

A 32-year-old veterinary technician presents to the emergency department 10 hours after sustaining a puncture bite from a domestic cat over the dorsum of her left midfoot. The patient reports excruciating, throbbing pain that woke her from sleep. Physical examination reveals intense erythema extending along the extensor digitorum longus tendons, tense edema, and purulent serosanguinous drainage from two puncture wounds. Microscopic evaluation of wound exudate demonstrates small Gram-negative coccobacilli with distinct bipolar 'safety-pin' staining. Which of the following antimicrobial regimens represents the first-line oral treatment of choice, and what common agent must be avoided due to intrinsic resistance?

A

First-line: Oral Cephalexin; Avoid: Amoxicillin-clavulanate

B

First-line: Oral Amoxicillin-clavulanate; Avoid: Cephalexin

C

First-line: Oral Vancomycin; Avoid: Ciprofloxacin

D

First-line: Oral Clindamycin; Avoid: Doxycycline

Test Your Knowledge

A 58-year-old shrimper with a history of chronic alcoholic cirrhosis accidentally punctures the dorsum of his foot on a wire mesh oyster cage while wading in brackish water off the coast of Louisiana. Within 20 hours, he develops high fever, chills, confusion, and excruciating pain in the lower extremity. On examination, the foot and distal calf display rapidly spreading violaceous erythema studded with large, tense, hemorrhagic bullae and patches of cutaneous necrosis. Laboratory testing shows a blood pressure of 82/46 mmHg, thrombocytopenia, and marked hyperferritinemia. Blood cultures reveal curved Gram-negative rods that require sodium chloride for in vitro growth. What underlying physiologic alteration directly explains this patient's extreme vulnerability to fulminant septic shock from this organism?

A

Chronic loss of secretory IgA across damaged intestinal mucosal membranes allowing bacterial translocation

B

Elevated transferrin saturation and free iron stores that fuel unrestricted bacterial proliferation

C

Defective neutrophil NADPH oxidase activity preventing reactive oxygen species generation

D

Impaired complement membrane attack complex assembly due to genetic C6 deficiency

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