3.3 Pneumonia & Lower Respiratory Tract Infections

Key Takeaways

  • Streptococcus pneumoniae is the most common causative organism of community-acquired pneumonia (CAP), while distinctive atypical pathogens present with characteristic extrapulmonary features: Mycoplasma (erythema multiforme, cold agglutinins), Legionella (travel, hotel water tanks, hyponatraemia, diarrhoea, deranged transaminases), Chlamydia psittaci (psittacine birds), and Staphylococcus aureus (cavitating lesions post-influenza).

  • The CURB-65 prognostic score stratifies mortality risk based on Confusion (AMTS <= 8), Urea > 7.0 mmol/L, Respiratory rate >= 30/min, Blood pressure (SBP < 90 or DBP <= 60 mmHg), and Age >= 65 years.

  • Empirical antimicrobial selection in CAP is governed by CURB-65 severity: Score 0-1 low risk (oral amoxicillin or doxycycline at home), Score 2 moderate risk (hospital admission with oral/IV amoxicillin plus a macrolide), and Score 3-5 high risk (urgent hospital admission, consider ICU, IV co-amoxiclav plus IV clarithromycin).

  • Hospital-acquired pneumonia (HAP, developing > 48 hours post-admission) is dominated by Gram-negative bacilli (Enterobacterales and Pseudomonas aeruginosa) and Staphylococcus aureus, requiring broad-spectrum antipseudomonal agents such as piperacillin-tazobactam.

  • Pneumocystis jirovecii pneumonia (PCP) in immunocompromised patients (CD4 < 200 cells/uL) causes severe exertional desaturation and bilateral perihilar ground-glass infiltrates; treatment requires high-dose co-trimoxazole and adjunctive systemic corticosteroids when room air PaO2 is < 9.3 kPa.

Last updated: October 2026

3.3 Pneumonia & Lower Respiratory Tract Infections

Pneumonia represents acute infection and inflammation of the lung parenchyma, producing alveolar consolidation and systemic inflammatory response. In the United Kingdom and on licensing examinations, clinical competency requires distinguishing typical from atypical organisms, calculating prognostic scores (CURB-65), selecting appropriate empirical antimicrobials, and managing opportunistic and nosocomial infections.


1. Community-Acquired Pneumonia (CAP): Pathogen Spectrum

Community-acquired pneumonia refers to acute pneumonia developing in individuals who have not been hospitalized or resided in a healthcare facility within the preceding 14 days.

Typical Pathogens

  1. Streptococcus pneumoniae (Pneumococcus):

    • Accounts for 50–60%50\text{--}60\% of all bacterial CAP cases.
    • Classically presents with abrupt high fevers, rigors, pleuritic chest pain, tachypnoea, and rust-coloured sputum.
    • Radiograph shows dense lobar consolidation with air bronchograms. Severe disease occurs particularly in asplenic patients, older adults, and individuals with chronic organ failure.
  2. Haemophilus influenzae:

    • Common cause of pneumonia and purulent bronchitis in patients with underlying COPD, bronchiectasis, and chronic smoking.
  3. Moraxella catarrhalis:

    • Frequently colonizes and infects elderly patients and individuals with chronic structural lung disease.

Atypical Organisms & High-Yield Clinical Associations

Atypical pathogens lack a rigid peptidoglycan cell wall (inherently resistant to beta-lactams) or replicate intracellularly, producing systemic extrapulmonary manifestations:

  • Mycoplasma pneumoniae:

    • Common in young adults, school-aged children, and university dormitory outbreaks.
    • Insidious onset with prolonged dry cough, prominent headache, sore throat, and arthralgias.
    • Extrapulmonary Hallmarks: Erythema multiforme (targetoid lesions), autoimmune haemolytic anaemia mediated by cold agglutinins (IgM antibodies), Stevens-Johnson syndrome, and neurological syndromes (Guillain-Barré, transverse myelitis).
  • Legionella pneumophila:

    • Transmitted by inhaling contaminated aerosolized water droplets from hotel air conditioning towers, spa pools, or hospital plumbing systems.
    • Rapidly progressive pneumonia with high fevers and relative bradycardia (Faget's sign).
    • Extrapulmonary Hallmarks: Profuse watery diarrhoea, abdominal pain, marked encephalopathy/confusion, severe hyponatraemia (due to renal sodium wasting or SIADH), and deranged liver transaminases.
    • Diagnosis & Treatment: Urinary antigen test (detects serogroup 1); treated with clarithromycin or levofloxacin.
  • Chlamydia psittaci (Psittacosis):

    • History of close contact with psittacine birds (parrots, parakeets, cockatoos) or poultry.
    • Features splenomegaly, high fever, epistaxis, and bilateral interstitial shadowing. Treated with doxycycline.
  • Coxiella burnetii (Q Fever):

    • Contact with livestock (cattle, sheep, goats) during calving or lambing seasons.
    • Manifests as acute pneumonia, culture-negative endocarditis, or granulomatous hepatitis.
  • Staphylococcus aureus (Post-Viral Secondary Bacterial Pneumonia):

    • Typically supervenes during or following recovery from acute influenza virus infection.
    • Causes rapid, necrotizing cavitating pneumonia with multiple abscesses, pneumatoceles, and high mortality. Requires treatment with IV flucloxacillin or co-amoxiclav (vancomycin/linezolid if MRSA is suspected).

2. Risk Stratification: The CURB-65 Score

The British Thoracic Society (BTS) and NICE recommend the CURB-65 score to stratify 30-day mortality risk and guide admission decisions in adults with CAP.

Criteria ItemClinical ParameterThreshold Defining 1 Point
CConfusionAbbreviated Mental Test Score (AMTS) ≤8\le 8, or new disorientation in person, place, or time
UUreaSerum urea >7.0 mmol/L> 7.0\text{ mmol/L} (reflects dehydration and catabolism)
RRespiratory RateRespiratory rate ≥30 breaths/min\ge 30\text{ breaths/min}
BBlood PressureSystolic BP<90 mmHg\text{BP} < 90\text{ mmHg} OR Diastolic BP≤60 mmHg\text{BP} \le 60\text{ mmHg}
65AgeAge ≥65 years\ge 65\text{ years}

Scoring Tiers and Clinical Disposition

  • Score 0 to 1 (Low Risk - Mortality <3%< 3\%):

    • Suitable for outpatient home management.
    • Provide oral antibiotic therapy, rest, hydration, and clear safety netting.
  • Score 2 (Moderate Risk - Mortality ∼9%\sim 9\%):

    • Inpatient hospital admission indicated.
    • Short inpatient stay or closely monitored outpatient ambulatory care with dual oral/IV antimicrobial therapy.
  • Score 3 to 5 (High Risk - Mortality 15–40%15\text{--}40\%):

    • Urgent hospital admission required.
    • Immediately evaluate for critical care unit (HDU or ICU) admission, particularly if multi-lobar consolidation or refractory hypoxaemia is present.

Note

In community general practice without immediate biochemistry access, the CRB-65 score (omitting the urea measurement) is utilized: Score 0 = home management; Score 1–2 = consider hospital referral; Score 3–4 = urgent hospital admission.


3. Empirical Antimicrobial Regimens for CAP (NICE Guidelines)

Antibiotic therapy should be initiated within 4 hours of arrival in hospital (or within 1 hour if sepsis or septic shock is present):

CURB-65 SeverityPreferred First-Line Antibiotic RegimenPenicillin Allergy Alternative
Low Severity (Score 0-1)Amoxicillin 500 mg500\text{ mg} TDS oral for 5 daysDoxycycline 200 mg200\text{ mg} stat then 100 mg100\text{ mg} OD, or Clarithromycin 500 mg500\text{ mg} BD
Moderate Severity (Score 2)Amoxicillin 500 mg500\text{ mg} TDS oral/IV PLUS Clarithromycin 500 mg500\text{ mg} BD oral/IV for 5 daysDoxycycline 200 mg200\text{ mg} stat then 100 mg100\text{ mg} OD, or Clarithromycin 500 mg500\text{ mg} BD (erythromycin in pregnancy)
High Severity (Score 3-5)Co-amoxiclav 1.2 g1.2\text{ g} TDS IV PLUS Clarithromycin 500 mg500\text{ mg} BD IV; total course 5 days, then stop unless not clinically stable or a specific pathogen needs longer (NICE NG138)Levofloxacin 500 mg500\text{ mg} BD (consult a microbiologist; add MRSA cover only if suspected or confirmed)

Essential Diagnostic Investigations in Inpatient CAP

  • Moderate to High Severity: Sputum microscopy and culture, blood cultures (before antibiotics), pneumococcal and Legionella urinary antigen tests, full blood count, renal and liver function panels, CRP, and arterial blood gas.
  • Repeat Radiography: NICE CG191 advises not routinely offering a follow-up chest X-ray to people whose symptoms have resolved. Consider one (usually about 6 weeks after treatment) for persistent symptoms or a higher risk of underlying lung cancer, such as smokers and people over 50.

4. Hospital-Acquired Pneumonia (HAP)

Hospital-Acquired Pneumonia is defined as pneumonia developing >48 hours> 48\text{ hours} after hospital admission that was neither present nor incubating at admission.

Microbiology & Resistance

Unlike CAP, HAP is dominated by nosocomial Gram-negative bacilli and hospital-adapted pathogens:

  • Pseudomonas aeruginosa
  • Klebsiella pneumoniae and other Enterobacteriaceae (E. coliE.\text{ coli}, Proteus)
  • Staphylococcus aureus (including Methicillin-Resistant S. aureusS.\text{ aureus} [MRSA])
  • Acinetobacter species in ventilated intensive care patients (VAP)

Empirical Management

  • Mild / Non-Severe HAP (Early Onset): Oral co-amoxiclav 625 mg625\text{ mg} TDS (or doxycycline/ceftriaxone) for 5 days.
  • Severe HAP / High Risk of Resistance (Late Onset >5 days> 5\text{ days}, ICU, Prior Antibiotics): Broad-spectrum intravenous antipseudomonal therapy with Piperacillin-tazobactam (Tazocin) 4.5 g4.5\text{ g} TDS IV, ceftazidime 2 g2\text{ g} TDS IV, or meropenem 1 g1\text{ g} TDS IV. Add vancomycin or linezolid if MRSA is suspected.

5. Aspiration Pneumonia

Aspiration pneumonia results from the inhalation of oropharyngeal secretions or gastric contents into the lower respiratory tract, triggering a chemical pneumonitis and secondary polymicrobial bacterial infection.

Risk Factors

  • Depressed conscious level (acute stroke, head trauma, general anaesthesia, alcohol or drug intoxication, post-ictal state).
  • Bulbar or pseudobulbar palsy (motor neurone disease, Parkinson's disease, myasthenia gravis).
  • Gastro-oesophageal reflux, persistent vomiting, or presence of a nasogastric feeding tube.

Anatomical Localization

Due to gravitational drainage and bronchial anatomy (the right main bronchus is wider, shorter, and more vertical):

  • Recumbent / Supine Patient: Apical (superior) segment of the right lower lobe or posterior segment of the right upper lobe.
  • Erect / Sitting Patient: Basilar segments of the right lower lobe.

Microbial Flora and Treatment

  • Dominated by oral anaerobes (Peptostreptococcus, Fusobacterium nucleatum, Prevotella, Bacteroides) alongside oral streptococci and Gram-negative bacilli.
  • First-Line Antibiotics: Intravenous Co-amoxiclav 1.2 g1.2\text{ g} TDS (or cephalosporin/ciprofloxacin plus intravenous Metronidazole 500 mg500\text{ mg} TDS for anaerobic coverage).

6. Pneumocystis jirovecii Pneumonia (PCP / PJP)

Pneumocystis jirovecii is an opportunistic fungal pathogen that causes severe, life-threatening pneumonia in immunocompromised individuals—classically patients with HIV infection with CD4 count <200 cells/μL< 200\text{ cells/}\mu\text{L}, solid organ transplant recipients, haematological malignancies, or those on prolonged high-dose corticosteroid therapy.

Clinical Triad & Hallmarks

  1. Insidious Progression: Subacute dry, non-productive cough, low-grade fevers, and progressive breathlessness evolving over weeks.
  2. Disproportionate Exertional Desaturation: Chest auscultation is frequently unremarkable, but oxygen saturation plunges dramatically upon minimal exertion (e.g., walking a short distance).
  3. Radiography: Bilateral, symmetrical perihilar ground-glass interstitial infiltrates ("bat-wing" distribution). Normal CXR occurs in up to 10% of cases; high-resolution CT shows diffuse ground-glass attenuation.

Diagnosis & Management

  • Microbiological Confirmation: Direct visualization of cysts on induced sputum or bronchoalveolar lavage (BAL) using silver stain (Grocott's methenamine silver) or immunofluorescence/PCR.
  • First-Line Antimicrobial Therapy: High-dose Co-trimoxazole (Trimethoprim-Sulfamethoxazole) given intravenously (120 mg/kg/day120\text{ mg/kg/day} in 3–4 divided doses) for 21 days.
  • Indications for Adjunctive Systemic Corticosteroids:
    • Corticosteroids (oral prednisolone or IV methylprednisolone) must be administered before or simultaneously with co-trimoxazole if moderate-to-severe hypoxaemia is present:
      • Room air PaO2<9.3 kPa\mathbf{\text{PaO}_2 < 9.3\text{ kPa}} (<70 mmHg< 70\text{ mmHg}), OR
      • Alveolar-arterial oxygen gradient ≥35 mmHg\ge 35\text{ mmHg}.
    • Mechanism: Lysis of organisms by antimicrobials causes intense inflammatory alveolar exudation; steroids prevent acute respiratory deterioration and fatal ARDS.
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Community-Acquired Pneumonia (CAP) Risk Stratification and Management
Test Your Knowledge

A 52-year-old civil engineer returns from a two-week conference in southern Europe where he stayed in a modern hotel. He presents to the acute medical unit with a 4-day history of high fever, rigors, a dry cough, shortness of breath, and watery diarrhoea. Over the last 24 hours, his wife notes he has become increasingly confused. On examination, his temperature is 39.4°C, heart rate is 78 beats/min (relative bradycardia), blood pressure is 112/70 mmHg, and respiratory rate is 26 breaths/min. Chest examination reveals bronchial breathing at the right lung base. Laboratory investigations show: Serum sodium 124 mmol/L, Serum potassium 4.1 mmol/L, Serum urea 6.2 mmol/L, ALT 115 U/L, AST 98 U/L, White cell count 14.5 x 10^9/L. Chest radiography confirms right lower lobe consolidation. What is the most appropriate initial diagnostic investigation and targeted empirical treatment?

A

Mycoplasma serology and oral amoxicillin

B

Urinary antigen testing and intravenous clarithromycin or levofloxacin

C

Throat swab PCR for respiratory syncytial virus and oral oseltamivir

D

Sputum acid-fast bacilli smear and quadruple antituberculous therapy

Test Your Knowledge

An 82-year-old woman is brought to the emergency department from a care home with fever, productive cough, and shortness of breath for 48 hours. On examination, she is disoriented to time and place with an Abbreviated Mental Test Score (AMTS) of 6/10 (her baseline was reported as 10/10). Her vital signs are: respiratory rate 34 breaths/min, blood pressure 84/52 mmHg, pulse 110 beats/min, temperature 38.6°C, and oxygen saturation 91% on room air. Laboratory tests reveal: Serum urea 11.2 mmol/L, Serum creatinine 135 umol/L, White cell count 18.2 x 10^9/L. Chest radiography demonstrates dense left lower lobe consolidation. What is her CURB-65 score, and what is the most appropriate management disposition?

A

CURB-65 score of 3; discharge to nursing home with oral co-amoxiclav and district nurse monitoring

B

CURB-65 score of 2; admit to a medical ward for oral amoxicillin monotherapy

C

CURB-65 score of 4; admit to an ambulatory care unit for outpatient daily intravenous ceftriaxone

D

CURB-65 of 5; admit, IV co-amoxiclav and clarithromycin, critical care review

Test Your Knowledge

A 36-year-old man who was diagnosed with HIV infection 3 years ago but has been non-adherent to antiretroviral therapy presents with a 3-week history of dry cough, low-grade fever, and progressive breathlessness. On physical examination, his chest is clear to auscultation. His resting oxygen saturation is 94% on room air, but it precipitously drops to 82% after walking 15 metres along the hospital corridor. His CD4 count is 95 cells/uL. Chest radiography demonstrates diffuse bilateral perihilar interstitial ground-glass opacities. Arterial blood gas on room air shows: pH 7.44, PaO2 8.2 kPa (61.5 mmHg), PaCO2 4.4 kPa (33 mmHg), HCO3- 22 mmol/L. What is the most appropriate definitive initial pharmacological treatment?

A

Intravenous piperacillin-tazobactam and oral clarithromycin

B

Quadruple antituberculous therapy (rifampicin, isoniazid, pyrazinamide, ethambutol)

C

High-dose intravenous co-trimoxazole and oral prednisolone

D

Oral amoxicillin-clavulanate and inhaled pentamidine

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