15.4 Gram-Negative Cocci/Coccobacilli & Fermentative/Nonfermenting Rods

Key Takeaways

  • Neisseria gonorrhoeae and N. meningitidis are Gram-negative diplococci; N. meningitidis has a polysaccharide capsule and causes meningococcemia and meningitis, while N. gonorrhoeae lacks a capsule and causes urethritis/cervicitis/PID
  • Haemophilus influenzae type b causes epiglottitis and meningitis in unvaccinated children; H. influenzae requires factor V (NAD) and factor X (hemin) for growth
  • Bordetella pertussis produces pertussis toxin (ADP-ribosylates Gi) and causes whooping cough, diagnosed by PCR and treated with macrolides
  • Enterobacteriaceae are oxidase-negative, glucose-fermenting rods including E. coli, Klebsiella, Salmonella, Shigella, and Proteus; Salmonella is motile and Shigella is nonmotile
  • Pseudomonas aeruginosa is a nonfermenting, oxidase-positive Gram-negative rod that produces pyocyanin (blue-green pigment) and causes nosocomial infections, otitis externa, and infections in cystic fibrosis
Last updated: August 2026

Gram-Negative Cocci: Neisseria

The genus Neisseria contains Gram-negative diplococci (coffee-bean–shaped pairs). Two species are major pathogens:

FeatureN. gonorrhoeaeN. meningitidis
CapsuleNoYes (polysaccharide, serogroups A, B, C, W-135, Y)
Maltose fermentationNegativePositive
Lactose fermentationNegativeNegative
OxidasePositivePositive
IgA proteaseYesYes
VaccineNoneConjugate (serogroups A, C, W-135, Y; separate B vaccine)
Classic diseaseUrethritis, cervicitis, PID, disseminated gonococcal infectionMeningitis, meningococcemia, Waterhouse-Friderichsen syndrome

N. meningitidis colonizes the nasopharynx and is transmitted by respiratory droplets; adolescents, military recruits, and asplenic/complement-deficient patients are at highest risk. Meningococcemia produces petechial/purpuric rash, septic shock, and Waterhouse-Friderichsen syndrome — bilateral adrenal hemorrhage with adrenal insufficiency. Endotoxin (lipooligosaccharide, LOS) drives the vasculitis and shock. Treatment is ceftriaxone (or penicillin); chemoprophylaxis of close contacts uses rifampin, ciprofloxacin, or ceftriaxone.

N. gonorrhoeae causes mucopurulent urethritis (dysuria and discharge), cervicitis, pelvic inflammatory disease (PID), and disseminated gonococcal infection (DGI) — migratory polyarthritis, tenosynovitis, and pustular rash on distal extremities. Neonatal ophthalmia neonatorum is prevented by silver nitrate or erythromycin eye prophylaxis. Drug resistance (penicillin, fluoroquinolones) is widespread; ceftriaxone (plus azithromycin or doxycycline for chlamydial co-infection) is first-line.

Gram-Negative Coccobacilli

Haemophilus influenzae

Small Gram-negative coccobacillus that requires both factor V (NAD) and factor X (hemin) for growth on chocolate agar (which provides both). It does not grow on blood agar unless a 'satellite' streak of S. aureus supplies factor V.

  • Encapsulated type b (Hib): epiglottitis ('cherry-red' epiglottis, drooling, tripod posture), meningitis, cellulitis, septic arthritis in unvaccinated children. Hib conjugate vaccine transformed pediatric epidemiology.
  • Nontypeable strains: otitis media, sinusitis, exacerbations of COPD.
  • Treatment: ceftriaxone for serious disease; amoxicillin-clavulanate for otitis.

Bordetella pertussis

Strictly aerobic, small Gram-negative coccobacillus that causes whooping cough (pertussis). Virulence factors include pertussis toxin (PT) — an AB toxin that ADP-ribosylates Gi, locking adenylyl cyclase 'on' → increased cAMP, lymphocytosis, and sensitivity to histamine — filamentous hemagglutinin (FHA), adenylate cyclase toxin, and tracheal cytotoxin (ciliostasis).

Clinically, pertussis has three stages:

  1. Catarrhal (1–2 wk): rhinorrhea, low fever, malaise — most contagious.
  2. Paroxysmal (2–6 wk): paroxysms of coughing followed by inspiratory whoop and post-tussive vomiting.
  3. Convalescent (weeks–months): lingering cough.

Diagnosis: nasopharyngeal PCR (most sensitive early) and culture on Bordet-Gengou (potato) agar (charcoal-containing Regan-Lowe transport). Treatment and post-exposure prophylaxis use macrolides (azithromycin); the acellular pertussis vaccine (Tdap) contains pertussis toxoid and filamentous hemagglutinin.

Enterobacteriaceae: Fermentative Gram-Negative Rods

The family Enterobacteriaceae comprises oxidase-negative, glucose-fermenting, nitrate-reducing Gram-negative rods. Most grow on MacConkey agar as lactose-fermenters (pink) or non-lactose-fermenters (colorless). They are the most common cause of urinary tract infections, intra-abdominal sepsis, and gram-negative bacteremia.

Lactose-Fermenters

OrganismFeaturesClassic disease
Escherichia coliLactose + (pink on MacConkey); K1 capsule in neonatesUrosepsis, neonatal meningitis, traveler's diarrhea (ETEC, EHEC)
Klebsiella pneumoniaeMucoid colonies; nonmotileLobar pneumonia (currant-jelly sputum), UTI
Enterobacter spp.Inducible AmpC beta-lactamaseNosocomial UTI, bacteremia

Non-Lactose-Fermenters

OrganismMotilityKey featuresDisease
Salmonella spp.MotileIntracellular survival; flagellar H antigenTyphoid fever (S. Typhi), gastroenteritis (S. Typhimurium, Enteritidis)
Shigella spp.NonmotileShiga toxin in S. dysenteriaeBacillary dysentery
Proteus spp.Swarming motilityUrease-positive; highly motileUTI, struvite stones
Yersinia enterocoliticaCold-growthMesenteric adenitis (pseudoappendicitis)

Distinctions That Appear on Exams

  • Salmonella vs. Shigella: Salmonella is motile, invades enterocytes and multiplies within macrophages, and bacteremia is common; Shigella is nonmotile, spreads cell-to-cell via actin rockets, and causes a more local colitis. Salmonella Typhi causes typhoid fever — step-ladder fever, rose spots, splenomegaly, ileal Peyer patch hypertrophy; treat with ceftriaxone (resistance to fluoroquinolones and chloramphenicol is common).
  • E. coli diarrheagenic variants:
    • ETEC (enterotoxigenic): traveler's diarrhea (LT and ST toxins, no invasion).
    • EPEC (enteropathogenic): infantile diarrhea, attaching-and-effacing lesions.
    • EHEC (enterohemorrhagic, e.g., O157:H7): Shiga-like toxin; bloody diarrhea without fever; hemolytic-uremic syndrome (HUS). Avoid antibiotics — they increase Shiga toxin release.
    • EIEC (enteroinvasive): dysentery-like.
    • EAEC (enteroaggregative): persistent pediatric diarrhea.
  • Klebsiella pneumonia classically presents with currant-jelly sputum in an alcoholic or diabetic patient.
  • Proteus produces urease, raising urine pH and forming struvite (magnesium ammonium phosphate) stones.

Nonfermenting Gram-Negative Rods: Pseudomonas

Pseudomonas aeruginosa is a strict aerobe, oxidase-positive (distinguishes it from Enterobacteriaceae), and produces pyocyanin (blue) and pyoverdin (fluorescent green) pigments. It thrives in water and moist environments and is a major nosocomial and opportunistic pathogen.

Clinical Syndromes

  • Ecthyma gangrenosum: hemorrhagic, necrotic skin lesions in bacteremic neutropenic patients.
  • Malignant otitis externa: invasive Pseudomonas otitis in diabetics, spreading to skull base (osteomyelitis).
  • Hot-tub folliculitis: self-limited pustular rash from contaminated water.
  • Cystic fibrosis lung disease: chronic infection driven by mucoid (alginate) exopolysaccharide biofilm; multi-drug resistant over time.
  • Burn-wound sepsis: green-blue exudate, high mortality.
  • Contact-lens keratitis: rapid corneal ulceration.

Antibiotics

Pseudomonas is intrinsically resistant to many antibiotics. Active agents include piperacillin-tazobactam, ceftazidime or cefepime, meropenem/imipenem (imipenem requires cilastatin to block renal dehydropeptidase), aztreonam (safe in penicillin-allergic patients), aminoglycosides (amikacin, tobramycin), ciprofloxacin/levofloxacin, and colistin (last-line for carbapenem-resistant strains). Severe infections warrant combination therapy and source control.

Fermenter vs. Nonfermenter Summary

TestEnterobacteriaceaePseudomonas
OxidaseNegativePositive
Glucose fermentationYesNo (oxidative only)
MacConkey growthYesYes (colorless)
PigmentNonePyocyanin, pyoverdin
Moist environmentLessStrongly associated
Approximate relative frequency of key Gram-negative rods in clinical isolates (illustrative)
Test Your Knowledge

A college student presents with fever, headache, and a petechial rash that progresses to purpura. Blood cultures grow Gram-negative diplococci that ferment maltose. Which virulence factor drives the septic shock and adrenal hemorrhage seen in this disease?

A
B
C
D
Test Your Knowledge

A child develops inspiratory stridor, drooling, and sits in a tripod posture. Lateral neck X-ray shows a swollen 'cherry-red' epiglottis. Which organism requires both factor V (NAD) and factor X (hemin) for growth?

A
B
C
D
Test Your Knowledge

A 70-year-old diabetic presents with severe ear pain, purulent drainage, and cranial nerve VII palsy. CT shows skull-base osteomyelitis. The organism is oxidase-positive and produces blue-green pigment. Which antibiotic class is most appropriate for severe infection?

A
B
C
D