13.3 Infectious Disease Principles & Systemic Pathogens

Key Takeaways

  • Fever of Unknown Origin (FUO) is defined as body temperature > 38.3°C (101.0°F) on multiple occasions lasting > 3 weeks, with no diagnosis established after 1 week of comprehensive inpatient or outpatient evaluation.
  • Neutropenic fever is defined as a single oral temperature >= 38.3°C (101.0°F) or >= 38.0°C (100.4°F) sustained for > 1 hour in a patient with an absolute neutrophil count (ANC) < 500/mm³; it requires immediate empiric monotherapy with an antipseudomonal beta-lactam (e.g., cefepime, piperacillin-tazobactam, meropenem).
  • Rocky Mountain Spotted Fever (Rickettsia rickettsii) presents with fever, headache, and a maculopapular rash starting on wrists and ankles that spreads centripetally and becomes petechial; oral doxycycline is the first-line treatment for all ages, including young children.
  • Babesiosis (Babesia microti) causes fever, hemolytic anemia, and jaundice following Ixodes tick exposure in the Northeastern US; peripheral blood smear displays intraerythrocytic tetrads ('Maltese cross'), treated with atovaquone plus azithromycin.
  • Central line-associated bloodstream infections (CLABSI) are most commonly caused by Staphylococcus epidermidis (coagulase-negative staphylococci), Staphylococcus aureus, and Candida species; prevention requires full barrier precautions and chlorhexidine skin antisepsis during insertion.
Last updated: July 2026

13.3 Infectious Disease Principles & Systemic Pathogens

Systemic infectious diseases present diagnostic challenges due to overlapping systemic manifestations. USMLE Step 2 CK emphasizes structured clinical evaluations for Fever of Unknown Origin (FUO), emergency management of neutropenic fever, differential diagnosis of vector-borne zoonoses, and prevention of healthcare-associated systemic infections.


Fever of Unknown Origin (FUO)

Diagnostic Criteria

Classic Fever of Unknown Origin (FUO) is defined by three strict clinical criteria:

  1. Body temperature $> 38.3^\circ\text{C}$ ($101.0^\circ\text{F}$) recorded on multiple occasions,
  2. Fever duration $> 3 \text{ weeks}$, and
  3. No definitive diagnosis established after $1 \text{ week}$ of intensive outpatient or inpatient investigation (or 3 outpatient visits / 3 days of inpatient testing).

Etiologic Spectrum

FUO cases fall into four major diagnostic categories:

CategoryFrequencyCommon Specific EtiologiesKey Diagnostic Clues
Infections$30\text{--}40%$Endocarditis, occult abscesses (intra-abdominal, pelvic), TB, EBV/CMV, HIV, osteomyelitisNew murmur, night sweats, localized pain, travel history
Malignancies$20\text{--}30%$Renal cell carcinoma, Lymphomas (Hodgkin/Non-Hodgkin), Leukemias, MyelodysplasiaWeight loss, B symptoms, LDH elevation, erythrocytosis
Connective Tissue / Autoimmune$15\text{--}20%$Giant cell arteritis, Adult-onset Still disease, SLE, Polyarteritis nodosaESR/CRP $> 100$, joint pain, salmon-colored rash, headache
Miscellaneous / Drug Fever$10\text{--}15%$Drug-induced fever (beta-lactams, anticonvulsants), Subacute thyroiditis, PETemporal relation to medication initiation, relative bradycardia

Febrile Neutropenia Protocol

Febrile neutropenia is a medical emergency requiring immediate empiric broad-spectrum intravenous antimicrobial therapy due to high risk of overwhelming bacterial sepsis.

Definitions

  • Fever: A single oral temperature $\ge 38.3^\circ\text{C}$ ($101.0^\circ\text{F}$) OR a sustained temperature $\ge 38.0^\circ\text{C}$ ($100.4^\circ\text{F}$) for $> 1 \text{ hour}$.
  • Neutropenia: Absolute Neutrophil Count (ANC) $< 500/\text{mm}^3$, or an ANC expected to fall $< 500/\text{mm}^3$ within 48 hours.

ANC calculation: ANC=Total WBC count×(%Neutrophils+%Bands100)\text{ANC calculation: } \text{ANC} = \text{Total WBC count} \times \left(\frac{\% \text{Neutrophils} + \% \text{Bands}}{100}\right)

Empiric Antibiotic Selection

Because neutropenic patients lack functional white blood cells to produce classic signs of localized inflammation (e.g., purulence), Pseudomonas aeruginosa and enteric Gram-negative bacilli can cause rapid mortality.

  • First-line Empiric Monotherapy: Immediate administration of an antipseudomonal $\beta$-lactam:
    • Cefepime ($2 \text{ g}$ IV q8h), OR
    • Piperacillin-tazobactam ($4.5 \text{ g}$ IV q6h), OR
    • Meropenem ($1 \text{ g}$ IV q8h).
  • Indications to Add Vancomycin: Vancomycin is NOT routinely included in initial empiric therapy unless specific indications exist: hemodynamic instability/septic shock, catheter-related infection, skin/soft tissue infection, known MRSA colonization, or pneumonia.
                    FEBRILE NEUTROPENIA EMERGENCY ALGORITHM
                    
       Single Temp >= 38.3°C (101°F) + ANC < 500/mm³
                                 |
                                 v
       Immediate Blood Cultures x 2 (Peripheral + Central Line)
       + Urinalysis, CXR, Physical Exam (DO NOT perform digital rectal exam!)
                                 |
                                 v
         Administer Empiric IV Antipseudomonal Monotherapy < 60 Min
         (Cefepime 2g IV OR Piperacillin-tazobactam 4.5g IV)
                                 |
         +-----------------------+-----------------------+
         |                                               |
   No MRSA / Shock Signs                   Hemodynamic Instability /
         |                                 Catheter Infection / MRSA Risk
         v                                               v
   Continue Monotherapy                    Add IV Vancomycin to 
   Re-evaluate at 48-72 hours              Antipseudomonal Beta-Lactam

Vector-Borne and Systemic Zoonotic Pathogens

Vector-borne infections present with characteristic cutaneous findings, geographic exposures, and peripheral blood features:

Pathogen / DiseaseVector / ReservoirGeographic DistributionClinical Features & LabsTreatment
Lyme Disease (Borrelia burgdorferi)Ixodes tick / White-footed mouseNortheast & Upper Midwest USErythema migrans (bullseye rash), AV block, facial nerve palsy, arthritisOral Doxycycline ($100 \text{ mg}$ BID); IV Ceftriaxone for carditis/CNS
Rocky Mountain Spotted Fever (Rickettsia rickettsii)Dermacentor tick / Dogs, rodentsSouth-Central & Southeastern USFever, severe headache, petechial rash starting on wrists/ankles spreading to trunkOral/IV Doxycycline (first-line for ALL ages, including children)
Babesiosis (Babesia microti)Ixodes tick / RodentsNortheast US (Nantucket, Martha's Vineyard)Hemolytic anemia, jaundice, splenomegaly; Maltese cross intraerythrocytic tetradsAtovaquone + Azithromycin
Anaplasmosis / EhrlichiosisIxodes / Amblyomma ticksNortheast (Anaplasma) / South-Central (Ehrlichia)Fever, leukopenia, thrombocytopenia, elevated LFTs; Morulae in granulocytes/monocytesOral/IV Doxycycline
Malaria (Plasmodium falciparum)Anopheles mosquitoSub-Saharan Africa, TropicsCyclical fevers, hemolytic anemia, splenomegaly; blood smear shows ring formsArtemether-lumefantrine or Atovaquone-proguanil
Leptospirosis (Leptospira interrogans)Water contaminated with animal urine (rats)Tropical regions, kayakersConjunctival suffusion (red eyes without exudate), jaundice, renal failure (Weil disease)Oral Doxycycline or IV Penicillin G

Healthcare-Associated Systemic Infections

Central Line-Associated Bloodstream Infections (CLABSI)

CLABSI is defined as a primary bloodstream infection occurring in a patient with a central venous catheter in place for $> 48 \text{ hours}$ prior to infection onset, which is not secondary to infection at another site.

  • Most Common Pathogens:
    1. Coagulase-negative Staphylococci (Staphylococcus epidermidis) — most common overall (biofilm formation).
    2. Staphylococcus aureus (both MSSA and MRSA).
    3. Candida species (especially in parenteral nutrition, prolonged broad-spectrum antibiotics).
    4. Enteric Gram-negative bacilli (E. coli, Klebsiella, Pseudomonas).
  • Prevention Bundle: Strict hand hygiene, maximal sterile barrier precautions during insertion, chlorhexidine skin antisepsis, avoidance of femoral vein insertion site, and daily review of line necessity with prompt removal of unneeded catheters.
Test Your Knowledge

A 48-year-old man undergoing induction chemotherapy for acute myeloid leukemia develops a fever of 38.6°C (101.5°F). His complete blood count demonstrates a total white blood cell count of 400/mm³ with 10% neutrophils and 0% bands (absolute neutrophil count = 40/mm³). Physical examination is unremarkable, and central venous catheter site is clean without erythema. Which of the following is the most appropriate initial management step?

A
B
C
D
Test Your Knowledge

A 34-year-old outdoor guide presents to an urgent care clinic in Rhode Island with 4 days of high fever, drenching night sweats, fatigue, and dark urine. He recalls multiple tick bites while hiking 3 weeks ago. Physical examination reveals scleral icterus and splenomegaly. Laboratory studies show hemoglobin of 8.2 g/dL, total bilirubin of 3.4 mg/dL (indirect 2.8 mg/dL), and LDH of 620 U/L. Peripheral blood smear reveals intraerythrocytic ring forms and tetrad formations. Which of the following is the first-line treatment for this condition?

A
B
C
D