6.3 Infectious Diseases and Antimicrobial Stewardship

Key Takeaways

  • Antimicrobial stewardship balances PK/PD targets: time-dependent beta-lactams require optimized time above MIC (T > MIC), aminoglycosides require peak concentration (Cmax/MIC), and vancomycin/fluoroquinolones require total drug exposure (AUC/MIC).

  • Outpatient CAP treatment stratifies healthy adults (high-dose amoxicillin or doxycycline) versus those with chronic comorbidities (beta-lactam + macrolide/doxycycline OR respiratory fluoroquinolone).

  • Uncomplicated female cystitis is treated with nitrofurantoin (5 days), fosfomycin (single dose), or TMP-SMX (3 days); asymptomatic bacteriuria must only be treated in pregnancy or before invasive urologic procedures.

  • Clostridioides difficile infection is treated first-line with oral vancomycin (125 mg QID x 10 days) or fidaxomicin (200 mg BID x 10 days); metronidazole is no longer recommended for initial episodes.

  • True cross-reactivity between penicillins and 3rd/4th generation cephalosporins or carbapenems is < 1-2% due to dissimilar R1 side chains, allowing safe use unless history indicates severe IgE-mediated anaphylaxis with identical side-chain structures.

Last updated: August 2026

Antimicrobial Stewardship and Pharmacodynamics

Antimicrobial Stewardship Programs (ASPs) optimize clinical outcomes, minimize toxicities, and reduce the selective pressure driving antimicrobial resistance. Key ASP interventions include prospective audit and feedback, formulary restriction, automatic IV-to-oral step-down protocols, dose optimization based on pharmacokinetic/pharmacodynamic (PK/PD) indices, and de-escalation based on microbiological culture and susceptibility testing.

PK/PD Classifications of Antimicrobials

+-------------------------------------------------------------------------+
|                   ANTIMICROBIAL PK/PD CLASSIFICATION                    |
+-------------------------------------------------------------------------+
|                                                                         |
|  1. TIME-DEPENDENT (T > MIC)                                            |
|     - Goal: Maximize time serum concentration exceeds MIC (%T > MIC)    |
|     - Strategy: Frequent intermittent dosing, extended or continuous IV |
|     - Drug Classes: Penicillins, Cephalosporins, Carbapenems, Aztreonam|
|                                                                         |
|  2. CONCENTRATION-DEPENDENT (Cmax / MIC)                                |
|     - Goal: Maximize peak serum concentration relative to MIC           |
|     - Strategy: High-dose, extended-interval (once-daily) dosing        |
|     - Drug Classes: Aminoglycosides (Gentamicin, Tobramycin), Daptomycin|
|                                                                         |
|  3. EXPOSURE-DEPENDENT (AUC / MIC)                                      |
|     - Goal: Maximize 24-hour total drug exposure relative to MIC        |
|     - Strategy: Optimize total daily dose (AUC24 / MIC ratio)           |
|     - Drug Classes: Vancomycin (target AUC 400-600), Fluoroquinolones,  |
|                     Macrolides, Tetracyclines                           |
+-------------------------------------------------------------------------+

Community-Acquired Respiratory Infections

Community-Acquired Pneumonia (CAP)

Primary pathogens include Streptococcus pneumoniae, Haemophilus influenzae, Moraxella catarrhalis, and atypical organisms (Mycoplasma pneumoniae, Chlamydia pneumoniae, Legionella pneumophila).

Clinical Setting & Patient ProfileRecommended Empiric RegimenRationale & Clinical Comments
Outpatient: Healthy, No ComorbiditiesHigh-Dose Amoxicillin (1 g1\text{ g} PO TID) OR Doxycycline (100 mg100\text{ mg} PO BID)Amoxicillin overcomes intermediate penicillin-resistant S. pneumoniae; macrolide monotherapy (azithromycin) is only acceptable if local pneumococcal resistance <25%< 25\%
Outpatient: With Comorbidities (COPD, heart failure, DM, CKD, alcoholism)Combination: Beta-lactam (Amoxicillin/clavulanate 875/125 mg875/125\text{ mg} PO BID or Cefuroxime axetil 500 mg500\text{ mg} BID) PLUS Macrolide (Azithromycin) or Doxycycline; OR Monotherapy: Respiratory Fluoroquinolone (Levofloxacin 750 mg750\text{ mg} daily or Moxifloxacin 400 mg400\text{ mg} daily)Combination covers typical encapsulated bacteria and atypical pathogens. Respiratory FQs reserved for beta-lactam allergy or clinical failure due to tendinopathy, QTc, and C. difficile risks
Inpatient: Non-Severe (General Ward)IV Ceftriaxone (1−2 g1-2\text{ g} daily) PLUS Azithromycin (500 mg500\text{ mg} daily); OR IV Levofloxacin / MoxifloxacinStandard duration is 5 days minimum; patient must be afebrile for ≥48 hours\ge 48\text{ hours} and clinically stable before discontinuing

Pediatric Acute Otitis Media (AOM)

  • First-Line: High-Dose Amoxicillin (80−90 mg/kg/day80-90\text{ mg/kg/day} divided BID or TID) for 5-10 days.
  • Second-Line / Beta-Lactamase Coverage: High-Dose Amoxicillin/Clavulanate (90 mg/kg/day90\text{ mg/kg/day} amoxicillin component with 6.4 mg/kg/day6.4\text{ mg/kg/day} clavulanate in a 14:1 ratio formulation to prevent clavulanate-induced diarrhea). Indicated if amoxicillin used within 30 days, concurrent purulent conjunctivitis, or clinical failure after 48-72 hours.

Group A Streptococcal Pharyngitis (S. pyogenes)

  • First-Line: Penicillin V (300 mg300\text{ mg} PO TID in children, 600 mg600\text{ mg} BID in adults) or Amoxicillin (50 mg/kg/day50\text{ mg/kg/day} once daily or divided BID) for a full 10-day course to prevent acute rheumatic fever.

Urinary Tract Infections (UTIs)

Escherichia coli accounts for >75−85%> 75-85\% of community UTIs, followed by Klebsiella pneumoniae, Proteus mirabilis, and Staphylococcus saprophyticus.

Uncomplicated Cystitis in Non-Pregnant Females

  1. Nitrofurantoin Monohydrate / Macrocrystals (MacroBID): 100 mg100\text{ mg} PO BID with food for 5 days. Efficacy remains high with minimal resistance. Contraindication: Avoid if eGFR<30 mL/min\text{eGFR} < 30\text{ mL/min} (inadequate urinary concentrations and risk of peripheral neuropathy/pulmonary toxicity). Not indicated for pyelonephritis due to negligible tissue penetration.
  2. Fosfomycin Tromethamine: 3 g3\text{ g} PO single-dose dissolved in cold water. Inactivates MurA (peptidoglycan synthesis).
  3. Trimethoprim-Sulfamethoxazole (TMP-SMX DS): 160/800 mg160/800\text{ mg} PO BID for 3 days. Use only if local E. coli resistance is <20%< 20\% or guided by susceptibility.
  4. Fluoroquinolones (Ciprofloxacin, Levofloxacin): Do not use for uncomplicated cystitis due to safety warnings (aortic aneurysm, tendinopathy, dysglycemia, peripheral neuropathy) and stewardship principles.

Complicated UTI and Acute Pyelonephritis

  • Outpatient Pyelonephritis: Oral Ciprofloxacin (500 mg500\text{ mg} PO BID x 7 days) or Levofloxacin (750 mg750\text{ mg} PO daily x 5 days) if local FQ resistance <10%< 10\%; otherwise, administer initial IV dose of Ceftriaxone (1 g1\text{ g}) prior to oral therapy. Total duration 7−147-14 days.

Asymptomatic Bacteriuria (ASB)

ASB is defined as ≥105 CFU/mL\ge 10^5\text{ CFU/mL} of bacteria in urine without urinary symptoms. Treat ONLY in:

  1. Pregnant individuals: (increases risk of pyelonephritis, low birth weight, preterm delivery). Screen at 12-16 weeks; treat with cephalexin, nitrofurantoin (avoid in 1st trimester and near term at 36-42 weeks due to neonatal hemolytic anemia), or amoxicillin/clavulanate for 3-7 days.
  2. Patients undergoing invasive urological procedures with suspected mucosal trauma. Do NOT screen or treat ASB in catheterized patients, elderly nursing home residents, non-pregnant premenopausal women, or diabetic patients.

Skin and Soft Tissue Infections (SSTIs)

  • Non-Purulent Cellulitis: (Spreading erythema, warmth, edema; predominantly Streptococcus pyogenes and methicillin-sensitive Staphylococcus aureus [MSSA]). Treat with Cephalexin (500 mg500\text{ mg} PO QID), Cefadroxil (500 mg500\text{ mg} PO BID), or Cloxacillin (500 mg500\text{ mg} PO QID) for 5-7 days.
  • Purulent Cellulitis / Cutaneous Abscess: (Predominantly community-acquired MRSA [CA-MRSA]). Incision and drainage (I&D) is the primary definitive treatment. If systemic signs or extensive surrounding cellulitis present, add oral antibiotics with MRSA activity: TMP-SMX (1−2 DS tabs1-2\text{ DS tabs} PO BID), Doxycycline (100 mg100\text{ mg} PO BID), or Clindamycin (300−450 mg300-450\text{ mg} PO TID) for 5-10 days.
  • Severe Inpatient MRSA Infections: IV Vancomycin (target AUC/MIC ratio 400−600400-600), Daptomycin (6−10 mg/kg6-10\text{ mg/kg} IV daily; inactivated by pulmonary surfactant, do not use in pneumonia), or Linezolid (600 mg600\text{ mg} PO/IV BID; weak MAO inhibitor, monitor for serotonin syndrome and myelosuppression with prolonged use >14 days> 14\text{ days}).

Sexually Transmitted Infections (Canadian Public Health Guidelines)

InfectionEtiologic AgentFirst-Line TherapyAlternative / Special Considerations
ChlamydiaChlamydia trachomatisDoxycycline (100 mg100\text{ mg} PO BID x 7 days)Azithromycin (1 g1\text{ g} PO single dose) preferred in pregnancy or confirmed non-compliance
GonorrheaNeisseria gonorrhoeaeCeftriaxone (250−500 mg250-500\text{ mg} IM single dose)Add Doxycycline (100 mg100\text{ mg} BID x 7d) if chlamydia not excluded. If ceftriaxone allergy: Gentamicin 240 mg240\text{ mg} IM + Azithromycin 2 g2\text{ g} PO
Syphilis (Primary, Secondary, Early Latent <1 yr< 1\text{ yr})Treponema pallidumBenzathine Penicillin G (2.4 million units2.4\text{ million units} IM single dose)Doxycycline 100 mg100\text{ mg} PO BID x 14 days if severe penicillin allergy (non-pregnant)
Syphilis (Late Latent >1 yr> 1\text{ yr}, Unknown)Treponema pallidumBenzathine Penicillin G (2.4 million units2.4\text{ million units} IM weekly x 3 doses)Pregnant patients with syphilis and penicillin allergy must undergo penicillin desensitization
NeurosyphilisTreponema pallidumAqueous Crystalline Penicillin G (18−24 million units/day18-24\text{ million units/day} IV x 10-14 days)IV continuous or divided q4h
TrichomoniasisTrichomonas vaginalisMetronidazole (500 mg500\text{ mg} PO BID x 7 days)Abstain from alcohol during and for 24-48 hours after treatment (disulfiram-like reaction)

Clostridioides difficile Infection (CDI)

C. difficile is a toxin-producing, spore-forming anaerobic bacterium triggered by broad-spectrum antibiotic exposure (clindamycin, fluoroquinolones, cephalosporins, carbapenems).

  • Initial Episode (Non-Severe or Severe):
    • Oral Vancomycin: 125 mg125\text{ mg} PO QID for 10 days.
    • Oral Fidaxomicin: 200 mg200\text{ mg} PO BID for 10 days (narrow-spectrum, lower recurrence rates, preserves gut microbiome).
    • Practice Change: Oral metronidazole is no longer recommended for initial CDI due to inferior clinical cure rates.
  • Fulminant CDI (Hypotension, Shock, Ileus, Toxic Megacolon):
    • High-dose Oral Vancomycin (500 mg500\text{ mg} PO/NG tube QID) PLUS IV Metronidazole (500 mg500\text{ mg} IV q8h) PLUS Vancomycin retention enema if ileus present.
  • Recurrent CDI:
    • First Recurrence: Fidaxomicin 200 mg200\text{ mg} BID x 10d (if vancomycin used initially) or tapered/pulsed oral vancomycin regimen.
    • Multiple Recurrences (≥2\ge 2 recurrences): Fecal Microbiota Transplantation (FMT) or Bezlotoxumab (monoclonal antibody targeting C. difficile Toxin B).

Beta-Lactam Allergy Assessment and Cross-Reactivity

Up to 10%10\% of patients report a penicillin allergy, but >90−95%> 90-95\% are found to be tolerant upon formal evaluation.

+-------------------------------------------------------------------------+
|                   BETA-LACTAM ALLERGY EVALUATION                        |
+-------------------------------------------------------------------------+
|                                                                         |
|  Type I IgE-Mediated (Immediate < 1 hr):                                |
|  - Anaphylaxis, bronchospasm, laryngeal edema, acute urticaria/hives   |
|  - Mechanism: Specific IgE against core beta-lactam ring / side chains |
|                                                                         |
|  Non-IgE / T-Cell Mediated (Delayed > 72 hrs):                          |
|  - Mild, flat, non-pruritic maculopapular exanthem (low risk)          |
|  - Severe Cutaneous Adverse Reactions (SCARs): SJS, TEN, DRESS, AGEP   |
|    --> ABSOLUTE CONTRAINDICATION to re-exposure with ANY beta-lactam    |
|                                                                         |
|  Cross-Reactivity Truths:                                               |
|  - Cross-reactivity between penicillins and 3rd/4th gen cephalosporins  |
|    (ceftriaxone, cefepime) or carbapenems (meropenem) is < 1-2%.        |
|  - Cross-reactivity is driven by IDENTICAL R1 SIDE CHAINS (e.g.,        |
|    Amoxicillin shares identical side chain with Ampicillin, Cefadroxil, |
|    and Cefprozil; Ampicillin shares side chain with Cephalexin).       |
+-------------------------------------------------------------------------+
Test Your Knowledge

A 23-year-old non-pregnant female presents to the community pharmacy with a 2-day history of dysuria, urinary urgency, and increased frequency without fever, flank pain, or vaginal discharge. She has no significant past medical history, and her renal function is normal. What is the most appropriate first-line antimicrobial regimen?

A

Ciprofloxacin 500 mg PO BID for 7 days

B

Amoxicillin 500 mg PO TID for 7 days

C

Nitrofurantoin monohydrate/macrocrystals 100 mg PO BID for 5 days

D

Azithromycin 1 g PO single dose

Test Your Knowledge

A 74-year-old hospitalized male developed profuse watery diarrhea (6 unformed stools per day), low-grade fever, and lower abdominal cramping 5 days after completing a course of IV ceftriaxone for pneumonia. Stool PCR testing confirms toxigenic Clostridioides difficile. His serum creatinine is 110 umol/L and WBC is 13.5 x 10^9/L. What is the recommended first-line treatment regimen for this initial episode of CDI?

A

Oral metronidazole 500 mg PO TID for 10 days

B

IV vancomycin 1 g IV q12h for 10 days

C

Oral ciprofloxacin 500 mg PO BID for 10 days

D

Oral vancomycin 125 mg PO QID for 10 days

Test Your Knowledge

A 26-year-old male is diagnosed with primary syphilis after presenting with a single painless genital chancre and a reactive RPR titer of 1:32. He has no known drug allergies. According to Canadian sexually transmitted infection guidelines, what is the first-line therapeutic regimen?

A

Benzathine penicillin G 2.4 million units IM as a single dose

B

Doxycycline 100 mg PO BID for 28 days

C

Ceftriaxone 250 mg IM as a single dose

D

Aqueous crystalline penicillin G 18 million units IV daily for 14 days

Test Your Knowledge

A 68-year-old female with severe COPD presents to the outpatient clinic with fever, purulent sputum, and new right lower lobe consolidation on chest radiograph, confirming community-acquired pneumonia (CAP). She has no known drug allergies. According to Canadian CAP guidelines, which empiric outpatient regimen is most appropriate?

A

Azithromycin 500 mg on day 1, then 250 mg daily for 4 days as monotherapy

B

Amoxicillin/clavulanate 875/125 mg PO BID plus azithromycin 500 mg day 1 then 250 mg daily

C

High-dose amoxicillin 1 g PO TID as monotherapy

D

Ciprofloxacin 500 mg PO BID as monotherapy

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