6.3 Endoscope Reprocessing

Key Takeaways

  • Flexible endoscopes are complex, expensive, semi-critical devices requiring meticulous reprocessing
  • The reprocessing sequence is: point-of-use treatment, leak testing, manual cleaning, visual inspection, HLD or sterilization, rinsing, drying, storage
  • AAMI ST91 is the standard for flexible and semi-rigid endoscope reprocessing
  • All channels must be brushed and flushed during manual cleaning — automated cleaning alone is insufficient
  • Automated endoscope reprocessors (AERs) provide more consistent HLD but do NOT replace manual pre-cleaning
  • Endoscopes must be stored hanging vertically in a well-ventilated cabinet with caps removed
  • Drying (including alcohol flush and forced air) is critical to prevent microbial growth in channels
  • Reprocessing failures with endoscopes have been linked to patient infection outbreaks
Last updated: March 2026

Endoscope Reprocessing

Flexible endoscope reprocessing is one of the most complex and highest-risk processes in Central Service. The intricate design of flexible endoscopes — with multiple narrow channels, delicate components, and materials that cannot tolerate heat — makes them especially challenging to reprocess. Failures in endoscope reprocessing have been directly linked to patient infection outbreaks.


The Complete Reprocessing Sequence

Step 1: Point-of-Use Treatment (at Procedure Site)

  • Immediately after removal from the patient, wipe the insertion tube
  • Flush all channels with manufacturer-recommended enzymatic solution
  • Suction enzymatic solution through the suction channel
  • Transport to reprocessing area in a covered, leak-proof container

Step 2: Leak Testing

  • Perform before every cleaning cycle — do not skip
  • Pressurize the scope per manufacturer IFU and submerge in water
  • Look for air bubbles indicating a breach in the outer sheath or channels
  • If leak detected: Remove from service → tag as damaged → send for repair
  • A scope with a leak must NEVER be processed further or used on a patient

Step 3: Manual Cleaning

This is the most critical step — automated cleaning alone is NOT sufficient:

  • Brush all accessible channels with appropriately sized brushes
  • Flush all channels with enzymatic detergent solution
  • Clean the exterior with a soft cloth and enzymatic solution
  • Clean all valves, buttons, and biopsy port caps
  • Brush tips should exit the distal end of the channel — this confirms the brush traversed the entire length
  • Rinse all channels and exterior thoroughly

Step 4: Visual Inspection

  • Inspect the insertion tube for damage, kinks, or discoloration
  • Check the distal tip for scratches or lens damage
  • Verify all valves and buttons are intact
  • Confirm channels are patent (not blocked)

Step 5: High-Level Disinfection or Sterilization

Manual HLD:

  • Completely immerse the scope in HLD solution
  • Fill ALL channels with solution (no air bubbles)
  • Maintain immersion for the required contact time
  • Verify MEC before each use

Automated (AER):

  • Connect ALL channel adapters per manufacturer instructions
  • Run the complete AER cycle
  • Verify cycle completion on the AER printout

Step 6: Rinse

  • Rinse thoroughly with appropriate water (critical water for final rinse)
  • Flush ALL channels to remove all HLD chemical residue
  • Inadequate rinsing can cause chemical injury to patients

Step 7: Drying

  • Alcohol flush: Flush all channels with 70% isopropyl alcohol to facilitate drying
  • Forced air: Blow compressed air through all channels to remove moisture
  • Critical importance: Moisture left in channels promotes bacterial growth (especially Pseudomonas)
  • Drying is NOT optional — it is a mandatory step

Step 8: Storage

  • Store hanging vertically in a well-ventilated endoscope drying/storage cabinet
  • Remove all valves and caps to allow air circulation through channels
  • Do not coil the scope tightly — this can damage internal channels
  • Storage cabinets should have HEPA-filtered air circulation

AAMI ST91: The Endoscope Reprocessing Standard

Key requirements from AAMI ST91 (Flexible and Semi-Rigid Endoscope Processing):

  • Written reprocessing procedures must be available at the point of processing
  • Staff must be trained and competency validated before processing endoscopes
  • All steps of the IFU must be followed — no shortcuts
  • Documentation of each reprocessing cycle
  • Quality monitoring including periodic culture surveillance

Common Endoscope Reprocessing Errors

ErrorConsequence
Skipping manual pre-cleaningBiofilm formation; HLD cannot penetrate soil
Skipping leak testUndetected damage; fluid intrusion; contamination
Inadequate channel brushingResidual bioburden in channels
Shortened HLD contact timeInadequate microbial kill
Inadequate rinsingChemical injury to next patient
Skipping alcohol flush/dryingBacterial growth in moist channels
Improper storage (coiled, in drawer)Moisture retention; contamination
Test Your Knowledge

Which step in endoscope reprocessing is considered the MOST critical?

A
B
C
D
Test Your Knowledge

Flexible endoscopes should be stored:

A
B
C
D
Test Your Knowledge

If a leak test reveals air bubbles from a flexible endoscope, the correct action is:

A
B
C
D