Key Takeaways

  • Microorganisms include bacteria, viruses, fungi, and prions — each has different characteristics and treatment
  • Bacteria are classified as gram-positive (retain crystal violet stain) or gram-negative (retain safranin counterstain)
  • Staphylococcus aureus (including MRSA) is the most common cause of surgical site infections
  • Standard Precautions apply to ALL patients and involve hand hygiene, PPE, and safe handling of sharps and waste
  • Transmission-Based Precautions are added for known/suspected infections: Contact, Droplet, and Airborne
  • Airborne Precautions require an N95 respirator (TB, measles, varicella); Droplet Precautions require a surgical mask (flu, COVID)
  • The chain of infection has 6 links: infectious agent, reservoir, portal of exit, mode of transmission, portal of entry, susceptible host
  • Surgical site infection (SSI) prevention includes preoperative antibiotics within 60 minutes of incision, proper skin prep, normothermia, and glycemic control
Last updated: February 2026

Microbiology & Infection Control

Microbiology appears as 6 scored questions (4% of the exam), but infection control concepts permeate every domain. Understanding pathogens and prevention is essential.


Types of Microorganisms

TypeCharacteristicsExamplesTreatment
BacteriaProkaryotic, single-celled; gram-positive or gram-negativeS. aureus, E. coli, PseudomonasAntibiotics
VirusesSmallest; require host cell to replicate; not killed by antibioticsHIV, Hepatitis B/C, COVID-19Antivirals (limited); vaccines
FungiEukaryotic; includes yeasts and moldsCandida, AspergillusAntifungals
PrionsMisfolded proteins; extremely resistant to sterilizationCreutzfeldt-Jakob Disease (CJD)No treatment; special instrument handling
ProtozoaSingle-celled eukaryotesPlasmodium (malaria)Antiparasitics

Gram Staining

ClassificationStain ResultCell WallExamples
Gram-positivePurple (retains crystal violet)Thick peptidoglycanStaphylococcus, Streptococcus, Clostridium
Gram-negativePink/red (retains safranin)Thin peptidoglycan + outer membraneE. coli, Pseudomonas, Klebsiella

Surgical Site Infection (SSI)

Most Common SSI Pathogens

  1. Staphylococcus aureus (including MRSA) — most common overall
  2. Coagulase-negative staphylococci (e.g., S. epidermidis) — common in implant infections
  3. Enterococcus species
  4. Escherichia coli — common in GI surgery
  5. Pseudomonas aeruginosa — common in burn and wound infections

SSI Risk Factors

  • Patient factors: Diabetes, obesity, malnutrition, immunosuppression, smoking, advanced age
  • Surgical factors: Long operative time, contaminated wound class, poor sterile technique, hypothermia
  • Environmental factors: Poor air quality, high OR traffic, breaks in sterile technique

SSI Prevention Bundle (SCIP / CMS Measures)

  • Prophylactic antibiotics: Given within 60 minutes of incision (120 minutes for vancomycin/fluoroquinolones)
  • Appropriate skin prep: CHG-alcohol for most; povidone-iodine for contraindicated sites
  • Normothermia: Maintain core temperature ≥ 36°C (96.8°F)
  • Glycemic control: Keep blood glucose < 200 mg/dL
  • Hair removal: Use clippers (NOT razors) if hair removal is needed — shaving increases SSI risk
  • Supplemental oxygen: Maintain adequate tissue oxygenation

Chain of Infection

The six links that must ALL be present for infection to occur:

  1. Infectious agent (the pathogen)
  2. Reservoir (where the pathogen lives: humans, environment, equipment)
  3. Portal of exit (how it leaves the reservoir: blood, respiratory droplets, wound drainage)
  4. Mode of transmission (how it reaches a new host: direct contact, droplet, airborne, vehicle, vector)
  5. Portal of entry (how it enters the new host: surgical wound, mucous membrane, respiratory tract)
  6. Susceptible host (a person with inadequate defenses)

Breaking any link prevents infection.


Standard Precautions & Transmission-Based Precautions

Standard Precautions (Apply to ALL Patients)

  • Hand hygiene: Before/after patient contact, after removing gloves, after contact with body fluids
  • PPE: Gloves, gowns, masks, eye protection — based on anticipated exposure
  • Sharps safety: Puncture-resistant containers, neutral zone
  • Respiratory hygiene/cough etiquette: Cover coughs, offer masks
  • Safe injection practices: One needle, one syringe, one patient

Transmission-Based Precautions (Added to Standard)

TypePathogen ExamplesRequirements
ContactMRSA, VRE, C. difficile, scabiesGown and gloves; dedicated equipment
DropletInfluenza, COVID-19, pertussis, meningococcalSurgical mask within 3-6 feet
AirborneTB, measles, varicella (chickenpox)N95 respirator; negative pressure room
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Chain of Infection
Test Your Knowledge

Which organism is the MOST common cause of surgical site infections?

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Test Your Knowledge

Prophylactic antibiotics should be administered within what time frame before surgical incision?

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B
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Test Your Knowledge

A patient with active pulmonary tuberculosis requires surgery. Which type of precautions should be used?

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D
Test Your Knowledge

Preoperative hair removal at the surgical site should be performed using:

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Test Your KnowledgeFill in the Blank

Gram-positive bacteria retain the crystal violet stain and appear _____ under the microscope.

Type your answer below