Key Takeaways
- Microorganisms include bacteria, viruses, fungi, and prions — each has different characteristics and treatment
- Bacteria are classified as gram-positive (retain crystal violet stain) or gram-negative (retain safranin counterstain)
- Staphylococcus aureus (including MRSA) is the most common cause of surgical site infections
- Standard Precautions apply to ALL patients and involve hand hygiene, PPE, and safe handling of sharps and waste
- Transmission-Based Precautions are added for known/suspected infections: Contact, Droplet, and Airborne
- Airborne Precautions require an N95 respirator (TB, measles, varicella); Droplet Precautions require a surgical mask (flu, COVID)
- The chain of infection has 6 links: infectious agent, reservoir, portal of exit, mode of transmission, portal of entry, susceptible host
- Surgical site infection (SSI) prevention includes preoperative antibiotics within 60 minutes of incision, proper skin prep, normothermia, and glycemic control
Last updated: February 2026
Microbiology & Infection Control
Microbiology appears as 6 scored questions (4% of the exam), but infection control concepts permeate every domain. Understanding pathogens and prevention is essential.
Types of Microorganisms
| Type | Characteristics | Examples | Treatment |
|---|---|---|---|
| Bacteria | Prokaryotic, single-celled; gram-positive or gram-negative | S. aureus, E. coli, Pseudomonas | Antibiotics |
| Viruses | Smallest; require host cell to replicate; not killed by antibiotics | HIV, Hepatitis B/C, COVID-19 | Antivirals (limited); vaccines |
| Fungi | Eukaryotic; includes yeasts and molds | Candida, Aspergillus | Antifungals |
| Prions | Misfolded proteins; extremely resistant to sterilization | Creutzfeldt-Jakob Disease (CJD) | No treatment; special instrument handling |
| Protozoa | Single-celled eukaryotes | Plasmodium (malaria) | Antiparasitics |
Gram Staining
| Classification | Stain Result | Cell Wall | Examples |
|---|---|---|---|
| Gram-positive | Purple (retains crystal violet) | Thick peptidoglycan | Staphylococcus, Streptococcus, Clostridium |
| Gram-negative | Pink/red (retains safranin) | Thin peptidoglycan + outer membrane | E. coli, Pseudomonas, Klebsiella |
Surgical Site Infection (SSI)
Most Common SSI Pathogens
- Staphylococcus aureus (including MRSA) — most common overall
- Coagulase-negative staphylococci (e.g., S. epidermidis) — common in implant infections
- Enterococcus species
- Escherichia coli — common in GI surgery
- Pseudomonas aeruginosa — common in burn and wound infections
SSI Risk Factors
- Patient factors: Diabetes, obesity, malnutrition, immunosuppression, smoking, advanced age
- Surgical factors: Long operative time, contaminated wound class, poor sterile technique, hypothermia
- Environmental factors: Poor air quality, high OR traffic, breaks in sterile technique
SSI Prevention Bundle (SCIP / CMS Measures)
- Prophylactic antibiotics: Given within 60 minutes of incision (120 minutes for vancomycin/fluoroquinolones)
- Appropriate skin prep: CHG-alcohol for most; povidone-iodine for contraindicated sites
- Normothermia: Maintain core temperature ≥ 36°C (96.8°F)
- Glycemic control: Keep blood glucose < 200 mg/dL
- Hair removal: Use clippers (NOT razors) if hair removal is needed — shaving increases SSI risk
- Supplemental oxygen: Maintain adequate tissue oxygenation
Chain of Infection
The six links that must ALL be present for infection to occur:
- Infectious agent (the pathogen)
- Reservoir (where the pathogen lives: humans, environment, equipment)
- Portal of exit (how it leaves the reservoir: blood, respiratory droplets, wound drainage)
- Mode of transmission (how it reaches a new host: direct contact, droplet, airborne, vehicle, vector)
- Portal of entry (how it enters the new host: surgical wound, mucous membrane, respiratory tract)
- Susceptible host (a person with inadequate defenses)
Breaking any link prevents infection.
Standard Precautions & Transmission-Based Precautions
Standard Precautions (Apply to ALL Patients)
- Hand hygiene: Before/after patient contact, after removing gloves, after contact with body fluids
- PPE: Gloves, gowns, masks, eye protection — based on anticipated exposure
- Sharps safety: Puncture-resistant containers, neutral zone
- Respiratory hygiene/cough etiquette: Cover coughs, offer masks
- Safe injection practices: One needle, one syringe, one patient
Transmission-Based Precautions (Added to Standard)
| Type | Pathogen Examples | Requirements |
|---|---|---|
| Contact | MRSA, VRE, C. difficile, scabies | Gown and gloves; dedicated equipment |
| Droplet | Influenza, COVID-19, pertussis, meningococcal | Surgical mask within 3-6 feet |
| Airborne | TB, measles, varicella (chickenpox) | N95 respirator; negative pressure room |
Loading diagram...
Test Your Knowledge
Which organism is the MOST common cause of surgical site infections?
A
B
C
D
Test Your Knowledge
Prophylactic antibiotics should be administered within what time frame before surgical incision?
A
B
C
D
Test Your Knowledge
A patient with active pulmonary tuberculosis requires surgery. Which type of precautions should be used?
A
B
C
D
Test Your Knowledge
Preoperative hair removal at the surgical site should be performed using:
A
B
C
D
Test Your KnowledgeFill in the Blank
Gram-positive bacteria retain the crystal violet stain and appear _____ under the microscope.
Type your answer below